| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,497,848 – 11,497,965 |
| Length | 117 |
| Max. P | 0.547294 |
| Location | 11,497,848 – 11,497,965 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.32 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -17.12 |
| Energy contribution | -17.16 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11497848 117 - 27905053 UUGGAGAAUUUUUCGAGUUU---UUAUAAUGGGCUUAUCAUAUUUUGGGUAGAUUUUCCCACUUACCGGCAUUGCCUGGCAGACAUCGCUCUCCCAUUGCUGCUGGGCCAAUUGCUCCUC ..(((((((((.((((((((---.......))))))..((.....)))).)))))))))........((((..(((..((((.((............))))))..)))....)))).... ( -29.60) >DroSec_CAF1 31958 93 - 1 UUA----AUAUU-UAAGUAU----------------------UUUUGGUUGGUUUUUCCCACUUACCGGCAUUGCCUGGCAGACAUCGCUUUCCCAUUGUUGCUGGGCCAAUUGCUCCUC ...----.....-..((((.----------------------..(((((((((...........))))))...(((..((((.((............))))))..)))))).)))).... ( -21.60) >DroEre_CAF1 35304 116 - 1 UUAGGAAAUAUUCUGAGUG----UGCUAAUGUGCUAAUCAUAUUUUGGGUGGGUUUUCCGACUUACCGGCAUUGCCUGGCAGACAUCGCUAUCCCAUUGCUGCUGGGCCAACUGCUCCUC ..((((.......(((..(----..(....)..)...))).......((((((((....)))))))).((((((((..((((.((............))))))..)).))).))))))). ( -34.40) >DroWil_CAF1 93812 90 - 1 ------------------UU---UUAGAUUUGGC--------UUUUGGGUGGUG-CAUUAACUUACCGGCAUGGCCUGGCAGACAUCGCUGUCCCAUUGCUGUUGUGCCAAUUGCUCCUC ------------------..---........(((--------..((.((((((.-.....)).))))((((..((..((((((((....))))....))))))..))))))..))).... ( -24.10) >DroYak_CAF1 29587 120 - 1 UUAGGCAAUGUUCUGAGUUUGAGUUCUAUUAUGCUAAUAAUUUAAUUGAUAGAUUUUCCGACUUACCGGCAUUGCCUGGCAGACAUCGCUCUCCCAUUGCUGCUGGGCCAGCUGCUCCUC ..((((((((((.((((((.(((.(((((((...(((....)))..)))))))..))).))))))..))))))))))((.((.((..(((..((((.......))))..))))))))).. ( -35.70) >consensus UUAG__AAUAUU_UGAGUUU___UUAUAAUGGGCU_AU_AU_UUUUGGGUGGAUUUUCCCACUUACCGGCAUUGCCUGGCAGACAUCGCUCUCCCAUUGCUGCUGGGCCAAUUGCUCCUC ...............................................(((((..........)))))((((..(((((((((.((............)))))))))))....)))).... (-17.12 = -17.16 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:18 2006