Locus 4361

Sequence ID 3R_DroMel_CAF1
Location 11,492,814 – 11,492,921
Length 107
Max. P 0.749931
window7131

overview

Window 1

Location 11,492,814 – 11,492,921
Length 107
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.93
Mean single sequence MFE -33.40
Consensus MFE -22.76
Energy contribution -24.18
Covariance contribution 1.42
Combinations/Pair 1.20
Mean z-score -1.74
Structure conservation index 0.68
SVM decision value 0.47
SVM RNA-class probability 0.749931
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11492814 107 - 27905053
UCUUCUCUUUAUUUUCUCGUCUCUUUGGCGGUUUCUACGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUGAUGGAG
......(((((((...((((((((...(((((((((.(.((((...)))).).))))))))).((....))...-....))))))))..((....))....))))))) ( -30.40)
>DroSec_CAF1 27006 107 - 1
UCUUCUCUUUAUUUUCCCGUCUCUGUGGCGGUUUCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUGGUGGAG
.................((((((((.((((((((((((.((((...)))).))))))))))).((....))...-.).)))))))).....(((((......))))). ( -37.30)
>DroSim_CAF1 27169 107 - 1
UCUUCUCUUUAUUUUCCCGUCUCUGUGGCGGUUUCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUGGUGGAG
.................((((((((.((((((((((((.((((...)))).))))))))))).((....))...-.).)))))))).....(((((......))))). ( -37.30)
>DroEre_CAF1 30247 106 - 1
UCUCCUCUUUAUU-UCCCGGGUCUGUGGCGGCUGCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCCCCAGCGAA-ACCCAGAGAUGAUUUGUUUACAUUCUCUUGGAG
.((((......((-(((.(((.(((((((.....((((.((((...)))).))))..))))))).))).).)))-)...(((((.....((....)).))))).)))) ( -36.10)
>DroYak_CAF1 24402 108 - 1
UCUCCUCUUUAUUUUCCCGGCUCUUUGGCGGCUGCUUCGCUUUGAAGAACGGAAGAAGCCGCAGCCCCAGCGAAAACCCAGAGAUGAUUUGUUUACAUUCUCUUGGAG
.((((.............((.((.((((.((((((...(((((...........))))).)))))))))).))....))(((((.....((....)).))))).)))) ( -29.40)
>DroAna_CAF1 114440 84 - 1
UCUUG-------CUGGCCGC-CUUUUGUCGGUCUCUGGGCUUUGAAGGCGCGAAGAAGCCGC----------------CAGGGGAGAUUUGUUUACAUUCUUCCAGAG
(((..-------(((((.((-((((....((((....))))..))))))((......)).))----------------)))((((((..((....)).))))))))). ( -29.90)
>consensus
UCUUCUCUUUAUUUUCCCGUCUCUGUGGCGGUUUCUUCGCUUUGAAGAAGGGAAGAAGCCGCAGCUCCAGCGAA_ACCCAGAGAUGAUUUGUUUACAUUCUGGUGGAG
.((((............(((((((...(((((((((((.((((...)))).))))))))))).((....))........)))))))...((....)).......)))) (-22.76 = -24.18 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:16 2006