| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,635,965 – 1,636,081 |
| Length | 116 |
| Max. P | 0.769245 |
| Location | 1,635,965 – 1,636,081 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.64 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -19.01 |
| Energy contribution | -18.57 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.769245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1635965 116 - 27905053 AACCUGCACAUUCUUACGGUACG----UACGUACAUACAACUAUUAUAUACUCCUAUAUCAUCAUAACAUAUACAUAGGUAUGUAUGUAUGUUUGUGUGGCUCUAACGGGCGCCCGACUU .....((.......(((((.(((----(((((((((((..(((((((((...................))))).)))))))))))))))))))))))..((((....))))))....... ( -29.21) >DroSec_CAF1 15347 112 - 1 AACCUGCACAUUCUUACGGUACGUAUGUACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA--------UGUAUGCAUGCAUGUGUGGCUCUAACGGGCGCCCGACUU ................(((...((((((....)))))).............................((((((--------((((....))))))))))((((....))))..))).... ( -25.60) >DroSim_CAF1 15295 104 - 1 AACCUGCACAUUCUUACGGUACG----UACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA--------UGUAUG----CAUGUGUGGCUCUAACGGGCGCCCGACUU ................(((....----......(((((((.(((((((((....(((......)))...))))--------)).)))----.)))))))((((....))))..))).... ( -20.90) >consensus AACCUGCACAUUCUUACGGUACG____UACAUACAUACAUCUAUCAUAUACUCCUAUAUCAUCAUAACAUAUA________UGUAUG_AUGCAUGUGUGGCUCUAACGGGCGCCCGACUU ................(((..............(((((((.....(((((....)))))........((((((........)))))).....)))))))((((....))))..))).... (-19.01 = -18.57 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:08 2006