Locus 4359

Sequence ID 3R_DroMel_CAF1
Location 11,486,235 – 11,486,338
Length 103
Max. P 0.635263
window7128

overview

Window 8

Location 11,486,235 – 11,486,338
Length 103
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 94.97
Mean single sequence MFE -28.18
Consensus MFE -23.12
Energy contribution -23.20
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value 0.21
SVM RNA-class probability 0.635263
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11486235 103 - 27905053
AAGACGUUGGCCAGCGAAAAGGAAAGGGGGCU-UCCAUUUGAAUGGGGGGGAGUACGGUUUUCCGGACGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU
.....((..(((..((....((((((...(((-(((.(((....))).))))))....))))))...))..)))..))..((((..(........)..)))).. ( -27.00)
>DroSec_CAF1 20430 102 - 1
AAGACGUUGGGCAGCGAAAAGGAAAAGGGGGU-UCCAUUUGAAUGGG-GGGAGUACGGUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU
..........(((((.....((((((..(..(-(((.(((....)))-.))))..)..))))))(((((((......)))))))...............))))) ( -29.40)
>DroSim_CAF1 20535 103 - 1
AAGACGUUGGCCAGCGAAAAGGAAAAGGGGGU-UCCAUUUGAAUGGGGGGGAGUACGGUUCUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU
....(.((((((....................-(((((....)))))((((((.....)))))))))))).)((((.(((..((.....))...)))))))... ( -27.70)
>DroEre_CAF1 23865 103 - 1
AAGACGCUGGCCAGCGAAAAGGAAAAGGGGGU-UCCAUUUGAAUGGGGGGGAGGACGGUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU
.....((((...........((((((..(..(-(((.(((....)))..))))..)..))))))(((((((......))))))).............))))... ( -28.10)
>DroYak_CAF1 17831 103 - 1
AAGACGUUGGCCAGUGAAAAGGAAAAGGGGGUUUCCAUUUGAAUGGG-GGGAGGACUAUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU
....(.((((((..(....)((((((.((..(((((...........-)))))..)).)))))))))))).)((((.(((..((.....))...)))))))... ( -28.70)
>consensus
AAGACGUUGGCCAGCGAAAAGGAAAAGGGGGU_UCCAUUUGAAUGGGGGGGAGUACGGUUUUCCGGCCGAGGGUUGACUUGGCUAAUGAAGAAAAAGCAGCUGU
...........((((.....((((((..(....(((((....)))))........)..))))))(((((((......)))))))...............)))). (-23.12 = -23.20 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:13 2006