Locus 4352

Sequence ID 3R_DroMel_CAF1
Location 11,467,645 – 11,467,748
Length 103
Max. P 0.875159
window7118

overview

Window 8

Location 11,467,645 – 11,467,748
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 99.35
Mean single sequence MFE -23.60
Consensus MFE -23.60
Energy contribution -23.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 1.00
SVM decision value 0.89
SVM RNA-class probability 0.875159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11467645 103 + 27905053
AAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC
..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) ( -23.60)
>DroSec_CAF1 1831 103 + 1
CAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC
..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) ( -23.60)
>DroSim_CAF1 2044 103 + 1
CAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC
..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) ( -23.60)
>consensus
CAAAUUCAGUUUAGUGGAAAAUUAUAAAAAUUAUAUUGCCACAUUUUGAAUUGCACUCGGCCUAUGCCUAAUUGAAUAUUUAUCAAAUGGAUAGUCUGGGGGC
..(((((((..(.((((.....((((.....))))...)))))..)))))))((.(((((.((((.((...((((.......))))..)))))).))))).)) (-23.60 = -23.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:04 2006