Locus 4349

Sequence ID 3R_DroMel_CAF1
Location 11,465,187 – 11,465,305
Length 118
Max. P 0.773479
window7114

overview

Window 4

Location 11,465,187 – 11,465,305
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -25.38
Consensus MFE -23.58
Energy contribution -23.20
Covariance contribution -0.38
Combinations/Pair 1.03
Mean z-score -1.78
Structure conservation index 0.93
SVM decision value 0.54
SVM RNA-class probability 0.773479
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11465187 118 - 27905053
--GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGGGCACCC
--((((.....))))((((((((...(((((......)))))...))...))))))..((..((((((............))))))..))((((....))))(((........))).... ( -27.50)
>DroSec_CAF1 199050 118 - 1
--GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGGCCACCC
--((((.....))))((((((((...(((((......)))))...))...))))))..((..((((((............))))))..))((((....))))(((.......)))..... ( -26.40)
>DroSim_CAF1 194219 118 - 1
--GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGACCACCC
--(((.(((((((((........)).(((((......))))))))))))..(((....((..((((((............))))))..))((((....)))).....)))..)))..... ( -23.70)
>DroYak_CAF1 191349 120 - 1
UACUUAUGAUUUAGGUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGCUCCCCC
.............((((((((((...(((((......)))))...))...)))))...((..((((((............))))))..))((((....)))))))............... ( -23.90)
>consensus
__GUUAUGAUUUAGCUUCCAUAUGCUUGUCUAACCGCAGACAUAAAUUACAUGGAAAAUAUUUGCCGCUCUACAAAUAUUGCGGCACUUAAGCACAAAUGCUGCCACCCACCGGCCACCC
..((((.....))))((((((((...(((((......)))))...))...))))))..((..((((((............))))))..))((((....)))).................. (-23.58 = -23.20 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:00 2006