Locus 4345

Sequence ID 3R_DroMel_CAF1
Location 11,464,261 – 11,464,361
Length 100
Max. P 0.551855
window7105

overview

Window 5

Location 11,464,261 – 11,464,361
Length 100
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 83.89
Mean single sequence MFE -22.80
Consensus MFE -13.22
Energy contribution -14.00
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -2.58
Structure conservation index 0.58
SVM decision value 0.04
SVM RNA-class probability 0.551855
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11464261 100 + 27905053
G--GGAAAAAAUAACACAAAAAAAUGGAGUUUCAUUUGCUCCAUUUUUUUUUUUUUUUAUUCGUAAAUUUACUGGACAGUUUCUUCUUGAGCUCUCUGCAAA
.--((((((((......(((((((((((((.......)))))))))))))))))))))...............(((.(((((......))))).)))..... ( -19.60)
>DroSec_CAF1 198069 92 + 1
G---GAAAAAAUAACACAAA-AAAUGGAGUUUCAUUUGCUCCAUUUUUUUUUUUUU-----UGCAAAUGUACUGUACUGUUCCUUCUGGAGCUCUCUGCA-A
(---.((((((......(((-(((((((((.......))))))))))))..)))))-----).)...((((..(....(((((....))))).)..))))-. ( -23.70)
>DroSim_CAF1 193217 92 + 1
GGGGGAAAAAAUAACACAAA-AAAUGGAGAUUCAUUUGCUCCAUUUUU----UUCU-----UGCAAAUGUAGUGGACUGUUCCUUCUGGAGCUCUCUGCAAA
(.(((((((((.........-..((((((.........))))))))))----))))-----).).......(..((..(((((....)))))..))..)... ( -25.10)
>consensus
G__GGAAAAAAUAACACAAA_AAAUGGAGUUUCAUUUGCUCCAUUUUUUUUUUUUU_____UGCAAAUGUACUGGACUGUUCCUUCUGGAGCUCUCUGCAAA
.....................(((((((((.......)))))))))...........................(((..(((((....)))))..)))..... (-13.22 = -14.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:51 2006