Locus 4337

Sequence ID 3R_DroMel_CAF1
Location 11,457,692 – 11,457,810
Length 118
Max. P 0.500000
window7088

overview

Window 8

Location 11,457,692 – 11,457,810
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.76
Mean single sequence MFE -22.42
Consensus MFE -18.18
Energy contribution -18.10
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -1.32
Structure conservation index 0.81
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11457692 118 + 27905053
UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCACUCUGCUC--AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC
.((((.(((.(.((..((((((....))))))..)).).)))..--))))...(((((........((((((((((.........))))))))))((.....))..)))))......... ( -23.60)
>DroSec_CAF1 190226 110 + 1
UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCUCUGCUC--A--------GUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC
.((((.((.....))....))))..((..((((..(((.(((..--.--------..)))......((((((((((.........)))))))))))))...))))))............. ( -19.60)
>DroSim_CAF1 185310 118 + 1
UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCUCUGCUC--AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC
.((((.(((....((.((((((....))))))...))..)))..--))))...(((((........((((((((((.........))))))))))((.....))..)))))......... ( -23.40)
>DroEre_CAF1 179421 120 + 1
UGGCUUGCAAAAUGCUUUUGGCCUCGGCCAAGUUCGCUCUGCUCGCUGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUGCUUCCACUUCUUACUUCC
.(((..(((....((.((((((....))))))...))..)))..)))......(((((.((.((..((((((((((.........)))))))))).....)).)).)))))......... ( -24.70)
>DroYak_CAF1 183342 118 + 1
UGACUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCACUGCUC--AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUUAAAUUGCAGUUAAGUUCUACUUCCACUUCUACUUUCC
(((.(((((....((.....))...((((.(((.......))).--))))......))))))))..((((((((((.........))))))))))......................... ( -20.80)
>consensus
UGGCUUGCAAAAUGCUUUUGGCCUCGGCUAAGUUCGCUCUGCUC__AGCCCUCAAGUGCAAUCAAAUAAUUGUAAUCUCUUUCAAAUUGCAGUUAAGUUCUACUUCCACUUCUUAUUCCC
(((.(((((...((..((((((....))))))..))....((.....)).......))))))))..((((((((((.........))))))))))......................... (-18.18 = -18.10 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:36 2006