Locus 433

Sequence ID 3R_DroMel_CAF1
Location 1,626,192 – 1,626,308
Length 116
Max. P 0.909855
window704

overview

Window 4

Location 1,626,192 – 1,626,308
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -30.70
Consensus MFE -21.80
Energy contribution -23.40
Covariance contribution 1.60
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.71
SVM decision value 1.07
SVM RNA-class probability 0.909855
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1626192 116 - 27905053
ACC--UCCGAGCCCAACCUUCACCUCCACCUCCACCUGCUCCUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUA-
(((--.(((((((((....................((((...(((((.(((...((....)).....)))))))).))))......(((((....))))).)))))))))....))).- ( -32.10)
>DroSec_CAF1 5528 116 - 1
ACC--UCCGAGCCCAACCUCCACCUCCACCUCCACCUGCUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUG-
(((--.(((((((((.....................(((((((((((.(((...((....)).....)))))))))).))))....(((((....))))).)))))))))....))).- ( -35.60)
>DroSim_CAF1 5538 104 - 1
ACC--UCCGAGCCCAACCUC------------CACCUGCUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUG-
(((--.(((((((((.....------------....(((((((((((.(((...((....)).....)))))))))).))))....(((((....))))).)))))))))....))).- ( -35.60)
>DroYak_CAF1 5368 100 - 1
AGGUGGCCAAGCCCAACCUC------------------CUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGUAUAGGUA-
.....((((((((((.....------------------...(((.((.(((((.(((..........)))))))).))..)))...(((((....))))).)))))))))).......- ( -33.20)
>DroAna_CAF1 5862 109 - 1
UCC--UCCUGCCGGAACCUCAACAUCAACAUCAA------CCUGGACCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUACUCA-GCAAAGUGGGCUUGGCAUGG-UGC
..(--.((((((((..((.(..............------........(((((.(((..........))))))))(((................-)))..).))..)))))).))-.). ( -16.99)
>consensus
ACC__UCCGAGCCCAACCUC_AC_UC_AC_UCCACCUGCUCGUGAGCCUGAACCUGAAAUCACUUAAUCAGUUUAUGCAGCACAAAUUUGCCCAGGCAAAGUGGGCUUGGCAUUGGUG_
......(((((((((......................((((((((((.(((...((....)).....)))))))))).))).....(((((....))))).)))))))))......... (-21.80 = -23.40 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:03 2006