Locus 4328

Sequence ID 3R_DroMel_CAF1
Location 11,453,024 – 11,453,137
Length 113
Max. P 0.810931
window7073

overview

Window 3

Location 11,453,024 – 11,453,137
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.83
Mean single sequence MFE -33.22
Consensus MFE -31.32
Energy contribution -31.36
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.22
Structure conservation index 0.94
SVM decision value 0.65
SVM RNA-class probability 0.810931
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11453024 113 - 27905053
CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU-------GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU
.(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).))))))).....-------((((((............)))))).(((....))). ( -32.70)
>DroSec_CAF1 185549 113 - 1
CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU-------GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU
.(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).))))))).....-------((((((............)))))).(((....))). ( -32.70)
>DroSim_CAF1 180600 113 - 1
CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU-------GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU
.(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).))))))).....-------((((((............)))))).(((....))). ( -32.70)
>DroEre_CAF1 174929 120 - 1
CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCGCCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACUGCCGACUGCUGGCUGCUGCCACUUGGCCAGCUGAUUAAUGUCU
.(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).)))))))........(((.((((((((........))))))))........))). ( -33.80)
>DroYak_CAF1 178550 120 - 1
CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCACUUCUGUCUGCCGACUGUUGGCUGCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU
.(((.((((.(((.((((((..(((.(((...((....))...)))....)))))))))..))).))))))).(((.((..(((((((((....))))....).))))..))....))). ( -34.20)
>consensus
CGCAUGAUGCAAGCGCUCAACUUGCUGCUCACUGACUUCACCUAGCCACCGCAUUGAGCCGCUUCUGUCUGCCAACU_______GCUGGCUGCUGCCACUUUGCCAGCUGAUUAAUGUCU
.(((.((((.((((((((((..(((.(((...((....))...)))....)))))))).))))).)))))))............((((((............)))))).(((....))). (-31.32 = -31.36 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:20 2006