Locus 4325

Sequence ID 3R_DroMel_CAF1
Location 11,443,684 – 11,443,801
Length 117
Max. P 0.988983
window7069

overview

Window 9

Location 11,443,684 – 11,443,801
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.65
Mean single sequence MFE -29.13
Consensus MFE -24.39
Energy contribution -25.64
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -2.29
Structure conservation index 0.84
SVM decision value 2.14
SVM RNA-class probability 0.988983
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11443684 117 - 27905053
CAUAUCAU-GACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAUCCCAGGGGACAC--ACACUCACGCCCCCAACAA
.......(-((..(((.......)))..))).(((((..(((.......))).)))))(.(((((.......((....)).((((......))))....--........))))))..... ( -30.70)
>DroSec_CAF1 183638 116 - 1
CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAACCCAGGGGACAC--ACACUCACGCC-CCAA-AA
......(((((..(((.......)))..)))))((((..(((.......))).))))...(((((.......((....)).((((......))))....--........)))-))..-.. ( -32.20)
>DroSim_CAF1 178221 117 - 1
CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAACGGGGCACACACACGACCACGCCCCCAGCCCAGGGGACAC--ACACUCACGCCCCCAA-AA
............(((((...............(((((..(((.......))).)))))..(((((..............))))).))))).((((....--..........))))..-.. ( -31.68)
>DroEre_CAF1 173070 98 - 1
CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCACAACAAGCAAUGACAGCGGGGCACACACACGGCCACGCC-CCAUCCC-----------------ACGCCCCCA----
......(((((..(((.......)))..)))))((((..(((.......))).)))).(.(((((........(((...)))-.......-----------------..)))))).---- ( -25.43)
>DroYak_CAF1 176598 118 - 1
CAUAUCAUUGAUGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAGGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAUCCCAGAGGACACACACACUUACGCCCCCA--GA
.....((((((..(((.......)))..))))))..............(((.......(.(((((..............)))))).(((....))).............)))....--.. ( -25.64)
>consensus
CAUAUCAUUGACGGGCUCCGUUCGCCACUCAAUGUCAACUGCAAAACAAGCAAUGACAGCGGGGCACACACACGACCACGCCCCCAUCCCAGGGGACAC__ACACUCACGCCCCCAA_AA
......(((((..(((.......)))..)))))((((..(((.......))).))))...(((((.......((....)).((((......))))..............)))))...... (-24.39 = -25.64 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:15 2006