Locus 4319

Sequence ID 3R_DroMel_CAF1
Location 11,440,750 – 11,440,860
Length 110
Max. P 0.937291
window7054

overview

Window 4

Location 11,440,750 – 11,440,860
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.04
Mean single sequence MFE -37.82
Consensus MFE -31.32
Energy contribution -31.72
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.83
SVM decision value 1.26
SVM RNA-class probability 0.937291
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11440750 110 - 27905053
ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGUAGGGUCAGCCGGAAGUGCAGGCGAGUCC----------UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA
.((...((.(((((...(((....)))..)))))))...))........((((((((.(((.........))))).)))----------)))...(((((((((....)))).))))).. ( -35.40)
>DroSec_CAF1 180730 110 - 1
ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCC----------UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA
..((.(((.(((((...(((....)))..)))))((((.....((((((((...(((.(((....).)).)))...(((----------(....)))).))))))))..))))))))).. ( -36.90)
>DroSim_CAF1 174908 110 - 1
ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCCCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCC----------UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA
............(((.(((.(((.((........((((.........)))).......(((....).)))).))).)))----------)))...(((((((((....)))).))))).. ( -35.90)
>DroEre_CAF1 170203 110 - 1
GCAGUAGCAGCAGCCAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGAAAGUGCAGGCGAGUGC----------UGCCAAGGAGCCCAUGAAAAUGGCGUUCUAA
(((((((((((((((.......))))...)))))(((..(((.(((....)))..)))(((....).)).)))...)))----------)))...(((((((((....)))).))))).. ( -40.90)
>DroYak_CAF1 173604 120 - 1
ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCCGGGGCAGUCUUGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA
......((((((((...(((....)))..)))))(((..(((.(((....)))..))).(((((..((....))..)))))))).....)))...(((((((((....)))).))))).. ( -40.00)
>consensus
ACAGUAGCAGCAGCAAGGAGUCGGCUUAAGUUGCGCCAAUGAAUUUAUGGGAGGGUCAGCCGGAAGUGCAGGCGAGUCC__________UGCAAAGGAGCCCAUGAAAAUGGCGUUCUAA
......((((((((...(((....)))..)))))(((..(((.(((....)))..)))(((....).)).)))................)))...(((((((((....)))).))))).. (-31.32 = -31.72 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:01 2006