Locus 4312

Sequence ID 3R_DroMel_CAF1
Location 11,435,956 – 11,436,062
Length 106
Max. P 0.974050
window7034

overview

Window 4

Location 11,435,956 – 11,436,062
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.21
Mean single sequence MFE -28.94
Consensus MFE -22.06
Energy contribution -22.46
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.48
Structure conservation index 0.76
SVM decision value 1.72
SVM RNA-class probability 0.974050
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11435956 106 + 27905053
-------CUGGAGGAGCUUCCAGCAGACACACACAAC-------AAAUAACGCUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCCUCCUCACCACCCCUU
-------...((((((.....(((.(((((.((....-------....(((........)))(((.(((......))).)))......)))))))...)))...)))))).......... ( -28.40)
>DroSec_CAF1 176064 105 + 1
-------CUGGAGGAGCUUCCAGCAGACACACACAAC-------AAAUAACGUUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCAUCCUCACCACCCCU-
-------...(((((......(((.(((((....(((-------.......)))..((((.((((.(((......))).))))..)))).)))))...)))....))))).........- ( -27.20)
>DroSim_CAF1 170261 105 + 1
-------CUGGAGGAGCUUCCAGCAGACACACACAAC-------AAAUAACGCUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCAUCCUCACCACCCCU-
-------...(((((......(((.(((((.((....-------....(((........)))(((.(((......))).)))......)))))))...)))....))))).........- ( -26.50)
>DroEre_CAF1 165656 100 + 1
AGCAGCUCUGGAGGAGCUUCCAGGAGACACACACAAC-------AAACAACGCUUAAAUGUGGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGUUUCGCUC-------------
(((....((((((....))))))(((((((((.(((.-------......(((......)))(((.(((......))).))).....)))))))....)))))))).------------- ( -30.30)
>DroYak_CAF1 168458 108 + 1
AGGAGCUCUGGAGGAGCUUCCAGGAGACACACACAACAACUAACAAAUAACGCUUAAAAGUGGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGUUUCUCUCC------------
((((((.((((((....))))))(((((((.((.................((((....))))(((.(((......))).)))......)))))).)))))))))....------------ ( -32.30)
>consensus
_______CUGGAGGAGCUUCCAGCAGACACACACAAC_______AAAUAACGCUUAAAAGUUGCUCGCCUCACCUGGCCAGCAUCCUUUGGUGUCCUCGCUUCCCUCCUCACCACCCCU_
.......((((((....))))))..(((((.((...............(((........)))(((.(((......))).)))......)))))))......................... (-22.06 = -22.46 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:43 2006