Locus 4297

Sequence ID 3R_DroMel_CAF1
Location 11,419,315 – 11,419,433
Length 118
Max. P 0.599541
window7001

overview

Window 1

Location 11,419,315 – 11,419,433
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.64
Mean single sequence MFE -15.82
Consensus MFE -14.88
Energy contribution -15.08
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.94
SVM decision value 0.13
SVM RNA-class probability 0.599541
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11419315 118 - 27905053
ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC
.((((((...............((.((((((((.....)))))))).)).......((--(..((((......((((((((....)))))))).))))..))).....))))))...... ( -16.20)
>DroSec_CAF1 166874 118 - 1
ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC
.((((((...............((.((((((((.....)))))))).)).......((--(..((((......((((((((....)))))))).))))..))).....))))))...... ( -16.20)
>DroSim_CAF1 159694 118 - 1
ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC
.((((((...............((.((((((((.....)))))))).)).......((--(..((((......((((((((....)))))))).))))..))).....))))))...... ( -16.20)
>DroEre_CAF1 154853 117 - 1
ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAA-AUUCCUUUUUGUUUGCACGCACCAAC--AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGACUCUACUGUAUAAAUUUGCGACCACC
.((((((........................-.....((((((((((....))..)))--)))))((((....((((((((....))))))))......)))).....))))))...... ( -15.90)
>DroYak_CAF1 159006 119 - 1
ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCACCAACACAAAAGACAGCAAACAAUAUUUUAA-AAAUAUUGACUCUACUGUAUAAAUUUGCGACCACC
.((((((...............((.((((((((.....)))))))).))................((((....(((((((....-.)))))))......)))).....))))))...... ( -14.60)
>consensus
ACGUAGAAAUUCCUAAUAAAUUUGAAAAUAAAAUUCCUUUUUGUUUGCACGCAUCAAC__AAAAGACAGCAAACAAUAUUUUAAAAAAUAUUGAGUCUACUGUAUAAAUUUGCGACCACC
.((((((...............((.((((((((.....)))))))).))................((((....((((((((....))))))))......)))).....))))))...... (-14.88 = -15.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:11 2006