| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,417,823 – 11,417,926 |
| Length | 103 |
| Max. P | 0.565750 |
| Location | 11,417,823 – 11,417,926 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.87 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -19.57 |
| Energy contribution | -20.21 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11417823 103 + 27905053 CCUUCCAUUAGCGUCAUUUUUGGUGCUGCAAGUUCCCGCUCCCAGCGUCUGAA-----------------UGUGGAAUUUGGCAAACACUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((((((..((....))..))))...((((.(((.....)))...)))-----------------)))))))((((((((.....))))))))....(((((....))))).... ( -24.80) >DroSec_CAF1 165445 103 + 1 CCUUCCAUUAGCGUAAUUUUUGGUGCUGGAAGCUCCCGUUCCCAGCGUCUGAG-----------------UGCGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..........((.........(..(((((.(((....))).)))))..).(((-----------------.(((...((((((((.....))))))))...)))..))).....)).... ( -25.70) >DroSim_CAF1 158252 103 + 1 CCUUCCAUUAGCGUCAUUUUUGGUGCUGGAAGCUCCCGUUCCCAGCGUCUGAG-----------------UGUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((..((.(((.....(..(((((.(((....))).)))))..)))))-----------------)))))))((((((((.....))))))))....(((((....))))).... ( -26.60) >DroEre_CAF1 153282 107 + 1 CCUUCCAUUAGCGUCAUUUUUGGUGCUGGGAGCUCCCGUUCCCAAGCUCUGAACGUCU-------------GUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((..((((.....(..(.(((((((((....)))))).))).)..)))))..-------------))))))((((((((.....))))))))....(((((....))))).... ( -34.60) >DroYak_CAF1 157443 120 + 1 CCUUCCAUUAGCGUCAUUUUUGGUGCUGGAAGCUCCCGUUGCCAACGUCUGAGCGUUUGAACGGAGUGAGUGUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((((((..((....))..))))...(((((((((.(.(((((....))))).))))))...))))))))))((((((((.....))))))))....(((((....))))).... ( -33.90) >consensus CCUUCCAUUAGCGUCAUUUUUGGUGCUGGAAGCUCCCGUUCCCAGCGUCUGAG_________________UGUGGAAUUUGGCAAACAAUUUGCUAAAAAACGUUUUUCUAAAAGCAAAA ..((((((..........((..(((((((.(((....))).)))))).)..))..................))))))((((((((.....))))))))....(((((....))))).... (-19.57 = -20.21 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:09 2006