Locus 4288

Sequence ID 3R_DroMel_CAF1
Location 11,412,276 – 11,412,385
Length 109
Max. P 0.999461
window6976

overview

Window 6

Location 11,412,276 – 11,412,385
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.62
Mean single sequence MFE -29.48
Consensus MFE -25.04
Energy contribution -25.44
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.98
Structure conservation index 0.85
SVM decision value 3.62
SVM RNA-class probability 0.999461
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11412276 109 + 27905053
UAAAAAACAACGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCA-----UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGUUGCUCGCUGGUCAUC
.......((.((.((((((((...((.((((((((.....))))..------.(((((((....-----)))))))................)))).)).)))))))).)).))...... ( -29.70)
>DroSec_CAF1 159917 109 + 1
UAAAAAACAACGUUCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCA-----UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGUUGCUCGCUGGUCAUC
...................((((((.((((.((((.....))))..------.(((((((....-----)))))))...............................))))))))))... ( -27.50)
>DroSim_CAF1 151380 109 + 1
UAAAAAACAGCGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCA-----UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGAUGCUCGCUGGUCAUC
.......(((((.(((.((((...((.((((((((.....))))..------.(((((((....-----)))))))................)))).)).)))).))).)))))...... ( -32.30)
>DroEre_CAF1 147697 114 + 1
UAAAAAACAACGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC------AAGAAGGACUCAACUCGUCCUUCCGCCGAGUACCCCAAAAUUCCACCCCCAGUUGCUCGCUGGUCAUC
...................(((((((((.(.((((.....)))).)------..(((((((.......)))))))))))(((((.....................)))))..)))))... ( -30.90)
>DroYak_CAF1 151684 115 + 1
UAAAAAACAACGUGCAAUAGACCAGCCGAGAGCUUAACCCAAGCCCAAGUCCAAGAAGGACUCA-----UCCUUCUGCCGGGUACCCCAAAAUUUCACCCUCAGUUGCUCGCCGGUCAUC
...................((((.((.(((((((...................(((((((....-----)))))))...((((.............))))..)))).))))).))))... ( -27.02)
>consensus
UAAAAAACAACGUGCAAUAGACCAGGCGAGAGCUUAACCCAAGCCC______AAGAAGGACUCA_____UCCUUCUGCCAUGUACCCCAAAAUUUCACCCUCUGUUGCUCGCUGGUCAUC
...................((((((.((((.((((.....)))).........(((((((.........)))))))...............................))))))))))... (-25.04 = -25.44 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:47 2006