| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,570,377 – 1,570,477 |
| Length | 100 |
| Max. P | 0.509037 |
| Location | 1,570,377 – 1,570,477 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.36 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -18.60 |
| Energy contribution | -19.27 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1570377 100 - 27905053 AUACCAAUGGAUAUUGACAAGACAAAUAAGACCAAAGUAUCGGCGUGGCAGUUCUAUGGGGUUUCCGUUGGAGUGGACGAUUCUAAUGAAGAAUCGCUAA ...((((((((..(((......)))....((((...(((..(((......))).)))..))))))))))))..(((.(((((((.....)))))))))). ( -25.80) >DroSec_CAF1 1274 92 - 1 AUACCAAUGGAUAUUGGCAAGACAAAUAAGACCA--------GCGAGGGAGUUCUAUGGGCUUUCCGUUGGAGUGGACGAUUCUGAUGAAGAAUCAAUAA ...(((.......(((......)))......(((--------(((.(..((((.....))))..)))))))..)))..((((((.....))))))..... ( -26.90) >DroSim_CAF1 1762 92 - 1 AUACCAAUGGAUAUUGGCAAGACAAAUAUGACCA--------GCGUGGCAGUUCUAUAGGCUUUCCGUUGGAGUGGACGAUUCUGAUGAAGAAUCAAUAA ...((((((((....(((..........((.((.--------....)))).........))).)))))))).......((((((.....))))))..... ( -24.31) >consensus AUACCAAUGGAUAUUGGCAAGACAAAUAAGACCA________GCGUGGCAGUUCUAUGGGCUUUCCGUUGGAGUGGACGAUUCUGAUGAAGAAUCAAUAA ...((((((((..(((......)))..................(((((.....))))).....)))))))).......((((((.....))))))..... (-18.60 = -19.27 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:55 2006