Locus 4269

Sequence ID 3R_DroMel_CAF1
Location 11,399,052 – 11,399,144
Length 92
Max. P 0.865529
window6928

overview

Window 8

Location 11,399,052 – 11,399,144
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.05
Mean single sequence MFE -28.90
Consensus MFE -20.27
Energy contribution -20.27
Covariance contribution -0.00
Combinations/Pair 1.11
Mean z-score -2.17
Structure conservation index 0.70
SVM decision value 0.85
SVM RNA-class probability 0.865529
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11399052 92 - 27905053
UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG---------------------CCCACUCAGCGGGUAAACCUCCUUGAAAUACUCC-------AGAAAGCUACGCAACA
........((.(((((((((((..(((((........)))))---------------------..)))((((.(((....))).).)))........-------.)))))))).)).... ( -24.60)
>DroSec_CAF1 146740 92 - 1
UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG---------------------CCCACUCAGCGGGUAAACCUCCUCGAAAUACUCC-------AGAAAGCUACGCAACA
........((.(((((((((((..(((((........)))))---------------------..)))((((.(((....))).)).))........-------.)))))))).)).... ( -24.60)
>DroSim_CAF1 137828 92 - 1
UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG---------------------CCCACUCAGCGGGUAAACCUCCUCGAAAUACUCC-------AGAAAGCUACGCAACA
........((.(((((((((((..(((((........)))))---------------------..)))((((.(((....))).)).))........-------.)))))))).)).... ( -24.60)
>DroEre_CAF1 134837 113 - 1
UUCAAAUGGCUUGGCUUUCGUGCACUGCUCCUCAGCUGGAAGCUGGGAGCUGGGAGCUGGAGACCCACUCAGCGGUAAAACCUCCUCGAAAUACCCC-------AGAAAGCCACGCAACA
........((.((((((((.......(((((.((((.....)))))))))((((.(((((........)))))((.....))............)))-------))))))))).)).... ( -44.90)
>DroYak_CAF1 137740 104 - 1
UUCAAAUGGCUUGGCUUUCGUGCACUUCGCCGCCGCUGGAAAU----------------GCAACCCACUCAGCGGUUAAACCUCCUCGAAAUACUCCAGAAUCCAGAAAGCUACGCAACA
........((.(((((((((.((.....)))((((((((....----------------.........)))))))).............................)))))))).)).... ( -25.82)
>consensus
UUCAAAUGGCUUGGCUUUCGUGCACUUCUCCUCCGCUGGAAG_____________________CCCACUCAGCGGGUAAACCUCCUCGAAAUACUCC_______AGAAAGCUACGCAACA
........((.(((((((((....)......((((((((.............................)))))))).............................)))))))).)).... (-20.27 = -20.27 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:01 2006