Locus 4267

Sequence ID 3R_DroMel_CAF1
Location 11,398,013 – 11,398,110
Length 97
Max. P 0.937939
window6925

overview

Window 5

Location 11,398,013 – 11,398,110
Length 97
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 95.28
Mean single sequence MFE -38.79
Consensus MFE -34.33
Energy contribution -35.89
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -2.35
Structure conservation index 0.88
SVM decision value 1.27
SVM RNA-class probability 0.937939
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11398013 97 + 27905053
AUUGCCGAAAAGGCAAAGAUCUCGGCCUGU--GUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGUCGGGAG
.(((((.....)))))...(((((((.(((--((((((.((((..............))))..))))...(((((.....)))))))))).))))))). ( -41.34)
>DroSec_CAF1 145712 99 + 1
AUGGCCGAAAACGCAAAGAUCUCGGCCUGUGUGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGCCGGGAG
...((.......)).....(((((((.((((((.((((.((((..............))))..)))))..(((((.....)))))))))).))))))). ( -37.64)
>DroSim_CAF1 136799 99 + 1
AUGGCCGAAAAGGCAAAGAUCUCGGCCUGUGUGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGCCGGGAG
...(((.....))).....(((((((.((((((.((((.((((..............))))..)))))..(((((.....)))))))))).))))))). ( -42.54)
>DroEre_CAF1 133878 97 + 1
AUGGCCGAAAAGGCAAAGAUCUCGGCCUC--UGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGCUUGACUGCCACACGAGCCAGGAG
.((((((...((((...(....).))))(--((.((((.((((..............))))..)))))))(((((.....)))))...)).)))).... ( -33.64)
>consensus
AUGGCCGAAAAGGCAAAGAUCUCGGCCUGU_UGUGCGGUGUGUGUAAAUCAAUCAAAACGCUUCCGCCGGGGCAGGUUGACUGCCACACGAGCCGGGAG
...(((.....))).....(((((((.((((((.((((.((((..............))))..)))))..(((((.....)))))))))).))))))). (-34.33 = -35.89 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:58 2006