Locus 4263

Sequence ID 3R_DroMel_CAF1
Location 11,396,324 – 11,396,440
Length 116
Max. P 0.514159
window6918

overview

Window 8

Location 11,396,324 – 11,396,440
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.28
Mean single sequence MFE -34.94
Consensus MFE -28.84
Energy contribution -29.48
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.30
Structure conservation index 0.83
SVM decision value -0.04
SVM RNA-class probability 0.514159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11396324 116 - 27905053
CA----CAUAUCACAUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC
..----................((((((.((((..(((.......(((..((((((...(((((..((.(....)))..))))))))))).)))........)))..))))))))))... ( -32.76)
>DroSec_CAF1 144092 116 - 1
UA----CAUAUCACAUGCACCCCAGGUGAGCACAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC
..----................((((((.(((((.(((.......(((..((((((...(((((..((.(....)))..))))))))))).)))........))))).)))))))))... ( -32.46)
>DroSim_CAF1 135147 116 - 1
UA----CAUAUCACAUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC
..----................((((((.((((..(((.......(((..((((((...(((((..((.(....)))..))))))))))).)))........)))..))))))))))... ( -32.76)
>DroEre_CAF1 132333 110 - 1
CA----CAUAUCACAUGCACCACAGGUGAGCA------AUGCUUGCAAAACUGUUCAAAGUGCUCCUGACUAAUGCAUUGGCACGAGCAGGUGGGUAAAUCGUCCUGUUGCCGCCUGUCC
..----...............(((((((.(((------((..........((((((...(((((..((.(....)))..)))))))))))..(((........))))))))))))))).. ( -32.30)
>DroYak_CAF1 135043 120 - 1
UAGGUGUAUAUCACUUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGGUAAAUUGUCCUGUUGCCGCCUGUCC
..((((((.......)))))).((((((.((((..(((....(((((...((((((...(((((..((.(....)))..)))))))))))...)))))....)))..))))))))))... ( -44.40)
>consensus
UA____CAUAUCACAUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC
......................((((((.(((...(((....((((((..((((((...(((((..((.(....)))..))))))))))).))).)))....)))...)))))))))... (-28.84 = -29.48 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:51 2006