Locus 4262

Sequence ID 3R_DroMel_CAF1
Location 11,396,068 – 11,396,182
Length 114
Max. P 0.915397
window6917

overview

Window 7

Location 11,396,068 – 11,396,182
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.55
Mean single sequence MFE -40.89
Consensus MFE -29.54
Energy contribution -29.86
Covariance contribution 0.32
Combinations/Pair 1.07
Mean z-score -2.68
Structure conservation index 0.72
SVM decision value 1.10
SVM RNA-class probability 0.915397
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11396068 114 - 27905053
CACC------CGCUUUCGCAUCCCCAACUCUAUCAUCCAUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU
....------....((((((((((((.(((((((((((((((((((((.....((((((........))))))....)))))))).))).))..)))..))))).))))))))))))... ( -44.80)
>DroSec_CAF1 143826 114 - 1
CAGC------CCCUUUUGCAACCCAAACUCCAUCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU
....------....((((((.(((...(((((((((..((((((((((.....((((((........))))))....)))))))))).)))).......)))))...))).))))))... ( -37.21)
>DroSim_CAF1 134891 114 - 1
CAGC------CCCUUUUGCAACCCAAACUCCAUCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU
....------....((((((.(((...(((((((((..((((((((((.....((((((........))))))....)))))))))).)))).......)))))...))).))))))... ( -37.21)
>DroEre_CAF1 132074 112 - 1
CA-------GCCCUCUUCAAGCCCAAUCCCCGCCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGG-GGUGCGAACUU
((-------.(((((((((((((..........(((..((((((((((.....((((((........))))))....)))))))))).)))....)))))))))).))-).))....... ( -38.24)
>DroYak_CAF1 134763 120 - 1
CACCCAGCACCCCUUUUCAAGCCCAAACUGCGCCACCCCUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGCAAUGGCUUGGAGAUGGGGGUGCGAACUU
......(((((((((((((((((.....(((((......(((((((((.....((((((........))))))....)))))))))..)))))..)))))))))..))))))))...... ( -47.00)
>consensus
CACC______CCCUUUUGCAACCCAAACUCCAUCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU
.................................((((((((((.((((..((((((..(((......((....))(((....))).)))..))))))..))))))))))))))....... (-29.54 = -29.86 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:50 2006