Locus 4261

Sequence ID 3R_DroMel_CAF1
Location 11,395,868 – 11,395,988
Length 120
Max. P 0.852030
window6916

overview

Window 6

Location 11,395,868 – 11,395,988
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.58
Mean single sequence MFE -27.74
Consensus MFE -26.22
Energy contribution -26.50
Covariance contribution 0.28
Combinations/Pair 1.03
Mean z-score -1.36
Structure conservation index 0.95
SVM decision value 0.79
SVM RNA-class probability 0.852030
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11395868 120 + 27905053
GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU
((......))((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... ( -28.40)
>DroSec_CAF1 143608 120 + 1
GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU
((......))((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... ( -28.40)
>DroSim_CAF1 134673 120 + 1
GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU
((......))((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... ( -28.40)
>DroEre_CAF1 131838 117 + 1
GAA---CCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCACAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU
...---....((((((....(((((..((((..(.....((....))....(((((((((.....................))))))))))..))))..))).)).....)))))).... ( -26.80)
>DroYak_CAF1 134532 119 + 1
GGAAC-CCCCGAAGCCUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAGAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU
((...-..))(((((.....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).))......))))).... ( -26.70)
>consensus
GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU
..........((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... (-26.22 = -26.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:49 2006