Locus 426

Sequence ID 3R_DroMel_CAF1
Location 1,568,874 – 1,568,977
Length 103
Max. P 0.505010
window696

overview

Window 6

Location 1,568,874 – 1,568,977
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.68
Mean single sequence MFE -44.92
Consensus MFE -30.88
Energy contribution -31.55
Covariance contribution 0.67
Combinations/Pair 1.26
Mean z-score -1.31
Structure conservation index 0.69
SVM decision value -0.06
SVM RNA-class probability 0.505010
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1568874 103 + 27905053
ACAGCUGAUGCGGGCAGCAGCGCUGCGGUCGGCGUCGGCGUCGUAGCUGGCAGCGAGGGCGUCAAUCUGGACUCGUCGCCACGCGAGUCCGGGGACGAUUCGG
...((((((((.(((.(((....))).))).))))))))((((....))))..((((..((((...((((((((((......)))))))))).)))).)))). ( -52.20)
>DroPse_CAF1 264 97 + 1
ACAGCUGAUGCUGGUGGCGGGGUU------GGUGUGGUCGUCGCAGGGGGAAGCGAGGGAGUCAAUUUGGAUUCAUCGCCUAGGGAAUCCGGCGACGAUUCAG
.(((((..(((.....))).))))------).((.(((((((((.(((....((((..(((((......))))).))))........))).))))))))))). ( -35.10)
>DroSim_CAF1 183 103 + 1
ACAGCUGAUGCGGGCAGCAGCGCUGCGGUCGGCGUCGGCGUCGUCGCUGGCAGCGAAGGCGUCAAUCUGGACUCGUCGCCACGCGAAUCCGGGGACGAUUCGG
...((((((((.(((.(((....))).))).))))))))((((((..((((.((....)))))).((((((.((((......)))).)))))))))))).... ( -49.90)
>DroEre_CAF1 180 97 + 1
ACAGCUGAUGCGGGCAGCAGCGUUGCGGUCGG------CGUCGUCGCUGGCAGCGAGGGCGUUAAUCUGGACUCGUCGCCACGCGAGUCCGGGGACGAUUCUG
...((((.((....)).)))).((((.(((((------((....))))))).))))(((((((..(((((((((((......))))))))))))))).))).. ( -43.90)
>DroYak_CAF1 180 103 + 1
ACAGCUGAUGCGGGCAGCAGCGUUGCAGUCGGCGUCGGCGUCGUCGCUGGCAGCGAGGGCGUCAAUCUGGACUCGUCGCCACGCGAGUCCGGGGACGAUUCGG
...((((((((.(((.((......)).))).))))))))(((.((((.....)))).)))(((...((((((((((......)))))))))).)))....... ( -53.30)
>DroPer_CAF1 199 97 + 1
ACAGCUGAUGCUGGUGGCGGGGUU------GGUGUGGUCGUCGCAGGGGGAAGCGAGGGAGUCAAUUUGGAUUCAUCGCCUAGGGAAUCCGGCGACGAUUCAG
.(((((..(((.....))).))))------).((.(((((((((.(((....((((..(((((......))))).))))........))).))))))))))). ( -35.10)
>consensus
ACAGCUGAUGCGGGCAGCAGCGUUGCGGUCGGCGUCGGCGUCGUAGCUGGCAGCGAGGGCGUCAAUCUGGACUCGUCGCCACGCGAAUCCGGGGACGAUUCGG
...((((..(((((((((...)))))....((((....)))).))))...))))(((..((((...((((((((((......)))))))))).)))).))).. (-30.88 = -31.55 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006