Locus 4257

Sequence ID 3R_DroMel_CAF1
Location 11,391,785 – 11,391,883
Length 98
Max. P 0.532237
window6911

overview

Window 1

Location 11,391,785 – 11,391,883
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 85.45
Mean single sequence MFE -18.63
Consensus MFE -18.60
Energy contribution -18.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score 0.26
Structure conservation index 1.00
SVM decision value -0.00
SVM RNA-class probability 0.532237
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11391785 98 + 27905053
AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAGACACACACACUCACACACUACAUAUACUC
..........(((.(((..((((((((((.((.....(((....))).....)).......(........).....)))))...)))))..))).))) ( -18.70)
>DroSec_CAF1 139593 79 + 1
AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAC-------------------ACAUAUACUC
..(((((((((......(((.....)))((((.......)))).)))))))))................-------------------.......... ( -18.60)
>DroSim_CAF1 130657 79 + 1
AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAC-------------------ACAUAUACUC
..(((((((((......(((.....)))((((.......)))).)))))))))................-------------------.......... ( -18.60)
>consensus
AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAC___________________ACAUAUACUC
..(((((((((......(((.....)))((((.......)))).)))))))))............................................. (-18.60 = -18.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:44 2006