Locus 4256

Sequence ID 3R_DroMel_CAF1
Location 11,391,353 – 11,391,464
Length 111
Max. P 0.980716
window6910

overview

Window 0

Location 11,391,353 – 11,391,464
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.11
Mean single sequence MFE -23.63
Consensus MFE -19.30
Energy contribution -20.74
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -2.25
Structure conservation index 0.82
SVM decision value 1.87
SVM RNA-class probability 0.980716
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11391353 111 - 27905053
---------CAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUACACA
---------..((((((((.((.(((......))).)).))))))))...(((((((..(((((.......)))))......................(....).........))))))) ( -25.60)
>DroSec_CAF1 139162 105 - 1
---------------CAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUCCACA
---------------........(((......)))...((..(((((..(((((.(((.((..(((((.................))))))).))).)).)))..)))))..))...... ( -19.33)
>DroSim_CAF1 130265 105 - 1
---------------CAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUCCACA
---------------........(((......)))...((..(((((..(((((.(((.((..(((((.................))))))).))).)).)))..)))))..))...... ( -19.33)
>DroEre_CAF1 127509 114 - 1
CCAUCCC--CAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCGAAAAUCCCACACUCAACUCGUCAUCAU----CCCCUCCACA
.......--..((((((((.((.(((......))).)).))))))))....(((((((((((((.......)))))..))).....)))))...............----.......... ( -25.50)
>DroYak_CAF1 129939 116 - 1
ACAUCCACACAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAU----CCCCUCCACA
.....((((((((((((((.((.(((......))).)).))))))))...))))))...(((((.......)))))..............................----.......... ( -28.40)
>consensus
_________CAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUCCACA
...........((((((((.((.(((......))).)).))))))))....(((((((((((((.......)))))..))).....)))))............................. (-19.30 = -20.74 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:43 2006