Locus 4254

Sequence ID 3R_DroMel_CAF1
Location 11,388,942 – 11,389,042
Length 100
Max. P 0.770245
window6907

overview

Window 7

Location 11,388,942 – 11,389,042
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -38.13
Consensus MFE -35.72
Energy contribution -36.17
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.91
Structure conservation index 0.94
SVM decision value 0.53
SVM RNA-class probability 0.770245
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11388942 100 + 27905053
AGAGAGGGAAAGAGUGGAGAGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUGUGUCCUGCUGACUGGCUGGUAUCCAUGCUCCAGCUCCUGCUCC
.(((.((((..((((((..(((((((....)))))))..))......((((..((((.(((.....)))))))..))))....))))....)))).))). ( -37.70)
>DroSec_CAF1 136713 100 + 1
AGAGGGGGAAAGAGUCGAGAGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUAUGUCCUGCUGACUGGCUGGUAUCCUUGCUCCAGCUCCUGCUCC
.(((.((((..(((.(((((((((((....)))))))..........((((..((((.(((.....)))))))..)))).)))))))....)))).))). ( -39.20)
>DroSim_CAF1 127822 100 + 1
AGAGAGGGAAAGAGUGGAGUGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUAUGUCCUGCUGACUGGCUGGUAUCCUUGCUCCAGCUCCUGCUCC
.(((.((((..(..((((((((((((....))))))...........((((..((((.(((.....)))))))..))))....)))))).))))).))). ( -37.50)
>consensus
AGAGAGGGAAAGAGUGGAGAGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUAUGUCCUGCUGACUGGCUGGUAUCCUUGCUCCAGCUCCUGCUCC
.(((.((((..((((((.((((((((....)))))))).))......((((..((((.(((.....)))))))..))))....))))....)))).))). (-35.72 = -36.17 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:40 2006