Locus 4252

Sequence ID 3R_DroMel_CAF1
Location 11,387,386 – 11,387,506
Length 120
Max. P 0.559038
window6902

overview

Window 2

Location 11,387,386 – 11,387,506
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.30
Mean single sequence MFE -29.48
Consensus MFE -22.40
Energy contribution -22.68
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.05
SVM RNA-class probability 0.559038
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11387386 120 - 27905053
GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACGCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA
((((..(((((..((((....)).....(((...(....)...))))).......((((.((((....((...(((((.......))))).)).....)))).))))))))))))).... ( -27.80)
>DroSec_CAF1 135143 120 - 1
GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGCCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA
(((((((..((....(((...........(((..(....).))).((((.((....))..))))..))).((((((((.......))))).)))....))...))))))).......... ( -26.10)
>DroSim_CAF1 126261 120 - 1
GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA
((((..(((((..((((....)).....(((...(....)...))))).......((((.((((....((...(((((.......))))).)).....)))).))))))))))))).... ( -28.00)
>DroEre_CAF1 123663 114 - 1
GGCAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACA------AAGAAAACUGCUGGCAAGACGGUGCUCGGAAAAACGCCGGGAUGCAGAAGCCAGGAGUGCUUGUGUUCCCA
(((.(((.((((..((((..........(((...(....)...------))).....((....)).)))).)))).))).....)))((((.(((.(((((....).)))).))))))). ( -33.30)
>DroYak_CAF1 125889 114 - 1
GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAACGAAAGACA------AAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAGGAGAGUUUGUGUUCUCA
.........((((((.............(((...(....)...------)))....((((((((....((...(((((.......))))).)).....)))))))).))))))....... ( -32.20)
>consensus
GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA
.........((((((...................(....)...............((((.((((....((...(((((.......))))).)).....)))).))))))))))....... (-22.40 = -22.68 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:35 2006