Locus 4251

Sequence ID 3R_DroMel_CAF1
Location 11,387,091 – 11,387,202
Length 111
Max. P 0.935411
window6901

overview

Window 1

Location 11,387,091 – 11,387,202
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.19
Mean single sequence MFE -20.59
Consensus MFE -19.84
Energy contribution -19.72
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.36
Structure conservation index 0.96
SVM decision value 1.24
SVM RNA-class probability 0.935411
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11387091 111 - 27905053
-------UAUCUCCUCACUUAACCGCACUUUUUUUGUGGCUCGUUGCCAUUACUUAAUUGAACUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUUCGGACCCGACUCUU--
-------...............(((((.((.....(((((.....))))).....)).))........(((((.((........)).)))))..)))......(((....))).....-- ( -17.80)
>DroSec_CAF1 134840 113 - 1
-------UAUCUCCUCACUUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGACUCUUCG
-------...............((((((.....)))))).(((...((....................(((((.((........)).)))))...(((....)))))...)))....... ( -21.90)
>DroSim_CAF1 125960 113 - 1
-------UAUCUCCUCACUUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGACUCUUCG
-------...............((((((.....)))))).(((...((....................(((((.((........)).)))))...(((....)))))...)))....... ( -21.90)
>DroEre_CAF1 123372 111 - 1
-------UAUCUGCCCUCCUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGCUCCCGACUCUU--
-------...............((((((.....))))))...((((......................(((((.((........)).)))))..((((....))))....))))....-- ( -21.00)
>DroYak_CAF1 125580 118 - 1
GUGCUAGUAUCUCCACACCUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCUGUUCCCGACUCUU--
((((....................)))).....(((((((.....)))).)))......((.(((...(((((.((........)).))))).(((((....)))))...))).))..-- ( -20.35)
>consensus
_______UAUCUCCUCACUUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGACUCUU__
......................((((((.....))))))...((((......................(((((.((........)).)))))..((((....))))....))))...... (-19.84 = -19.72 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:34 2006