Locus 425

Sequence ID 3R_DroMel_CAF1
Location 1,555,639 – 1,555,730
Length 91
Max. P 0.727178
window695

overview

Window 5

Location 1,555,639 – 1,555,730
Length 91
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 87.86
Mean single sequence MFE -23.32
Consensus MFE -17.10
Energy contribution -19.10
Covariance contribution 2.00
Combinations/Pair 1.10
Mean z-score -1.81
Structure conservation index 0.73
SVM decision value 0.41
SVM RNA-class probability 0.727178
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1555639 91 + 27905053
CGAUUUUGGAUGGGUCAGGAAAAAAGGGUGCACCUUUUGCCCUUUAUGGGAUAAAAUAGUUUGCAAAAAUUAUAUCAUAAA-AAUCGAAGAC
(((((((..((((...(((..((((((.....))))))..)))............(((((((....))))))).)))).))-)))))..... ( -20.40)
>DroSec_CAF1 57177 92 + 1
CGAUUUUGGAUGGGUCAGGCCGAAAGGGUGCACCUUUUGCCCUUUUUGGGAUCAAAUAGUUUGCAAAAAUGAUCUCAUAAAAAAGCAAAGAU
.(.((((..((((((((((.(((((((.....))))))).))((((((.((.(.....).)).))))))))))).)))..)))).)...... ( -23.10)
>DroSim_CAF1 57767 92 + 1
CGAUUUUGGAUGGGUCAGGCCGAAAGGGUGCACCUUUUGCCCUUUUUGGGAUCAAAUAGUUUGCAAAAAUGAUCUUAUAAAAAAGCAAAGAC
...(((((...((((((((.(((((((.....))))))).))((((((.((.(.....).)).))))))))))))..))))).......... ( -22.00)
>DroYak_CAF1 52543 91 + 1
GGAUUUGGGAUGGGUCAGGCCAAAAGGGUGCACCUUUGGCCCUUCUUG-GAUAACACAGUUUGCAAAAAUGAUCCCAUAAAAAAUCUAAGAA
((((((...(((((((((((((((.((.....)))))))))....(((-.......)))..........))).)))))...))))))..... ( -27.80)
>consensus
CGAUUUUGGAUGGGUCAGGCCAAAAGGGUGCACCUUUUGCCCUUUUUGGGAUAAAAUAGUUUGCAAAAAUGAUCUCAUAAAAAAGCAAAGAC
.((((((..((((((((((.(((((((.....))))))).))((((((.((.........)).))))))))).)))))..))))))...... (-17.10 = -19.10 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:53 2006