Locus 4249

Sequence ID 3R_DroMel_CAF1
Location 11,385,887 – 11,385,999
Length 112
Max. P 0.500000
window6898

overview

Window 8

Location 11,385,887 – 11,385,999
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.17
Mean single sequence MFE -33.33
Consensus MFE -25.26
Energy contribution -25.98
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -1.51
Structure conservation index 0.76
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11385887 112 - 27905053
AAGCAUUAGGGUAAGUAUUGCCGUGGUGGAGAGAA-------GGGUGUGGC-AGAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG
...(((((((.(((((.(((((..(.(........-------.).)..)))-))..(((..((((........))))...))))))))))))))).((((..((......))...)))). ( -28.30)
>DroSec_CAF1 133646 112 - 1
AAGCAUUAGGGUAAGUAUUGCCAUGGUCGAGGGGA-------GGGUGUGGC-AGAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG
...(((((((.(((((.((((((((.((.......-------)).))))))-))..(((..((((........))))...))))))))))))))).((((..((......))...)))). ( -34.70)
>DroSim_CAF1 124764 112 - 1
AAGCAUUAGGGUAAGUAUUGCCAUGGUCGAGGGGA-------GGGUGUGGC-AAAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAGUUACUGGG
...(((((((.(((((.((((((((.((.......-------)).))))))-))..(((..((((........))))...))))))))))))))).(((((((((...)))))..)))). ( -34.80)
>DroEre_CAF1 122136 111 - 1
AAGCAUUAGGGCCAGUAUUGCCAUGGUCGAGGGGC-------UGGUGUG--CAAGGGGAGAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG
...........((((((..((((..(((....)))-------))))(((--((((......((((........)))).((.(((((.....)))))))...))))))).....)))))). ( -32.70)
>DroYak_CAF1 124326 120 - 1
AAGCAUUAGGGUAAGUAUUGCCAUGGCCGAGGGGGGAGUGGAGGGUGUGGCGAGGGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG
...(((((((.(((((.((((((((.((..............)).))))))))...(((..((((........))))...))))))))))))))).((((..((......))...)))). ( -36.14)
>consensus
AAGCAUUAGGGUAAGUAUUGCCAUGGUCGAGGGGA_______GGGUGUGGC_AGAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG
...(((((((.(((((...((((((.((..............)).)))))).....(((..((((........))))...))))))))))))))).((((..((......))...)))). (-25.26 = -25.98 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:31 2006