Locus 4240

Sequence ID 3R_DroMel_CAF1
Location 11,377,255 – 11,377,375
Length 120
Max. P 0.936182
window6877

overview

Window 7

Location 11,377,255 – 11,377,375
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -31.18
Consensus MFE -27.66
Energy contribution -27.62
Covariance contribution -0.04
Combinations/Pair 1.19
Mean z-score -1.56
Structure conservation index 0.89
SVM decision value 1.25
SVM RNA-class probability 0.936182
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11377255 120 - 27905053
UAUUUUAAGUUUCAGUCUGGCACUUUGGCAGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUUGAAGCUCUGGAUGUCAAGGUUGUUGCAAUG
..............(((((.(.....).))))).....(((((.(((....((.(((((.(((((((.....(((((....)))))....))))))).)))))))....))).))))).. ( -34.40)
>DroSec_CAF1 124897 120 - 1
UAUUUUAUGUUUCAGUCGGGCACUUUGGCAGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUUGAAGCCUUGGAUGUCAAGGUUGUUGCCAUG
..................((((((((((((.........(((.((.....)).)))..(((((((((.....(((((....)))))....)))).))))).)))))))))....)))... ( -27.00)
>DroSim_CAF1 115901 120 - 1
UAUUUUAAGUUUCAGUCGGGCACUUUGGCGGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUCGAAGCUCUGGAUGUCAAAGUUGUUGCCAUG
..............(((((.....))))).(((((((((((..((.....)).((((((.(((((((.....(((((....)))))....))))))).))))))))))..)))))))... ( -32.40)
>DroEre_CAF1 112450 120 - 1
UAUUUUAAGUUUCAGACGGGCACUUUGGCAGGCAAUAUCUGCACCAAAAAGGAGCAUCCCGAGUUCCCAUCAGAUAUAUUUAUAUCCUUCGAAGCUCUAAAUGUCAAGGUUAUUGCCAUG
(((((..((((((.((.(((.((((.((((((.....))))).((.....))......).)))).))).)).(((((....)))))....))))))..)))))....(((....)))... ( -29.40)
>DroYak_CAF1 114990 120 - 1
UAAUUUAAGUUUCAGUCGGGCACUUUGGCAGGCAAUAUCUGUACCAAAAAGGAGCAUCCCGAGUUUCCAUCAGAUAUAUUCAUAUCCUUCGAGGCUCUGGAUGUCAAGGUGAUAGCCAUG
.................((.((((((((((((.....))))).((.....)).((((((.(((((((.....(((((....)))))....))))))).)))))))))))))....))... ( -32.70)
>consensus
UAUUUUAAGUUUCAGUCGGGCACUUUGGCAGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUCGAAGCUCUGGAUGUCAAGGUUGUUGCCAUG
..................((((((((((((.........(((.((.....)).)))(((.(((((((.....(((((....)))))....))))))).))))))))))))....)))... (-27.66 = -27.62 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:10 2006