| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,373,695 – 11,373,809 |
| Length | 114 |
| Max. P | 0.967573 |
| Location | 11,373,695 – 11,373,809 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.09 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -5.08 |
| Energy contribution | -6.92 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.21 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11373695 114 + 27905053 UAAAUGCAAUUGAUAGGGUAUGCAGUAGCUGCCAAUGAAAUG--AACAGAAAUAUUGCUGAGUCACAUAAUUACUCUAUCAACAGAGAAAGCCU---CUGUUUA-ACUAAGAUUGCAUUU .(((((((((((((((((((.((((((.(((.((......))--..)))...)))))).............)))))))))(((((((.....))---)))))..-.....)))))))))) ( -34.04) >DroSec_CAF1 121322 117 + 1 UAGAUGCAAUUGCUAGGGUAUUCAGUAGUUGCCAAUGAAAUAUUUAUACAAAUACUGCUGAGUCACAAAAUUACUCUAUCAACAGAGAAAGCCU---UUGUUUAAACUAAGAUUGCAUUU .((((((((((..(((.((((((((((((.....((((.....))))......)))))))))).))..............(((((((.....))---)))))....))).)))))))))) ( -29.20) >DroSim_CAF1 112349 117 + 1 UAAAUGCAAUUGCUAGGGUAUUCAGUAGUCGCCAAUGAAAUAUAUACACAAAUAUUGCUGAGUCACAAAAUUACUCUAUCAACAGAGAAAGACU---UUGUUUAAACUAAGAUUGCAUUU .((((((((((..(((.((((((((((((........................)))))))))).))..............(((((((.....))---)))))....))).)))))))))) ( -24.66) >DroEre_CAF1 108904 116 + 1 AAAAUGA-CCUUUUAGAGUAUCGAAAGACCAGCAAUGAAAAA--AAAACCAAUAAUGCUGAGUCACAAAAGUACUCUAUCAACAGAAAA-AAUUAACUGAGUUAGACUGAGAUUGCACUU .......-.....((((((((.....((((((((........--...........))))).)))......))))))))...........-......((.((.....)).))......... ( -18.71) >DroYak_CAF1 111437 113 + 1 AAAAUAAAACUCCGAGGGUAUCAAAAGAUUGCGAAUGAAAA---AAUGCAAAUAACGCUGAGUCACAAAACUACUCUAUCAACAAAAAG-GCCU---UUGUUUAAACUGUAAUUGCAUUU ............(((((((.........(((((..(....)---..)))))........((((.........)))).............-))))---))).................... ( -12.50) >consensus UAAAUGCAAUUGCUAGGGUAUCCAGUAGUUGCCAAUGAAAUA__AACACAAAUAAUGCUGAGUCACAAAAUUACUCUAUCAACAGAGAAAGCCU___UUGUUUAAACUAAGAUUGCAUUU .((((((((((..(((((((((....)).))))..........................((((.........))))..............................))).)))))))))) ( -5.08 = -6.92 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:48 2006