| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,550,954 – 1,551,048 |
| Length | 94 |
| Max. P | 0.894217 |
| Location | 1,550,954 – 1,551,048 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.84 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -13.99 |
| Energy contribution | -16.69 |
| Covariance contribution | 2.70 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1550954 94 + 27905053 UUUCGAUGGAUUU-UCUCCUUAAUCUGAAUCGAUCGAUCGUCGGGGGGAAAAGGGUUGCCCGGCA-ACAAAGACGAAAGUUUCGAAUUUCCAGCCA-- ..(((((.(((((-............))))).))))).....((..(((((...(((((...)))-))..((((....))))....)))))..)).-- ( -26.40) >DroSec_CAF1 52481 93 + 1 GAUCGAUGGAUUUGUAUUCUUAAUCUGAAUCCAUCGAUCAUCGA--GAAAAGGGGUUGCCCGGCA-AGCAAGACGAAAGUUUCGAAUUUCCAGCCA-- (((((((((((((.............))))))))))))).....--.....(((....)))(((.-....((((....)))).(......).))).-- ( -30.52) >DroSim_CAF1 53110 93 + 1 GAUCGAUGGAUUUAUAUUCUUAAUCUGAAUCCAUCGAUCAUCGA--GGAAAGGGGUUGCCCGGCA-AGCAAGACGAAAGUUUCGAAUUUCCAGCCA-- ((((((((((((((.((.....)).)))))))))))))).....--((((((((....)))....-..(.((((....)))).)..))))).....-- ( -33.30) >DroEre_CAF1 52127 90 + 1 GAUUGAUGGAUGU-UUUCCUUAAUCGGAAUCCAUCGAUCAUCGC--GGAAAGGGGUUGCCUGGCCC---AAGACGAAAGUUUCGAAUUUCCAGCCA-- (((((((((((..-..(((......))))))))))))))...((--(((((.(((((....)))))---.((((....))))....))))).))..-- ( -34.00) >DroYak_CAF1 48148 95 + 1 GAUUAAUGGAUAU-UUUUCUUAAUCAGAAUACAUCGAUCAUCGC--GGAAAGGGGUUGCCCAACGAAAGAAGACGAAAGUUUCGAAUUUCCAGCAAUG (((..(((..(((-(((........)))))))))..)))...((--((((((((....)))..(((.....(((....))))))..))))).)).... ( -21.60) >DroAna_CAF1 50035 86 + 1 AAUA-ACUGAUUU-UCCUCUUCAUCGAAACUCAUCAAUCAUGUC--GCCAAGGGGUAGAUCUGUA---UAAGCUGAAAGUUUCGGAUUUCC---UA-- ....-((.(((((-.((((((...(((....(((.....)))))--)..)))))).))))).)).---....((((.....))))......---..-- ( -13.80) >consensus GAUCGAUGGAUUU_UAUUCUUAAUCUGAAUCCAUCGAUCAUCGC__GGAAAGGGGUUGCCCGGCA_A_CAAGACGAAAGUUUCGAAUUUCCAGCCA__ (((((((((((((.............))))))))))))).......((((((((....))).........((((....))))....)))))....... (-13.99 = -16.69 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:51 2006