Locus 4229

Sequence ID 3R_DroMel_CAF1
Location 11,370,252 – 11,370,372
Length 120
Max. P 0.656185
window6851

overview

Window 1

Location 11,370,252 – 11,370,372
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -34.16
Consensus MFE -29.80
Energy contribution -30.60
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.87
SVM decision value 0.26
SVM RNA-class probability 0.656185
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11370252 120 - 27905053
UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACUGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCAAACCCAGUCUGUAAUUGCCCAUAU
......(((......))).((((.((..(((((...((.((((((((.......)))))))).)).(((((..((.((......)).)).))))).......))))).....)))))).. ( -32.40)
>DroSec_CAF1 117887 120 - 1
UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACAGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU
......(((......))).((((.((.(((..((..(((((((..(((......))).((((....)))).....)))))))...))..)))((((((.......)))))).)))))).. ( -35.90)
>DroSim_CAF1 108922 120 - 1
UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACAGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU
......(((......))).((((.((.(((..((..(((((((..(((......))).((((....)))).....)))))))...))..)))((((((.......)))))).)))))).. ( -35.90)
>DroEre_CAF1 105676 120 - 1
UCUGCAGUAUCACUUCACCAUGGAGCCCCAGACAACUGUGGCCAUUCCGUUUGAAGAUGGUCUCAAAAUCUUUUCGGCCACCCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU
...(((((....((((.....))))...(((((...(((((((((.(((...((((((.........)))))).)))((((...)))))))).)))))....)))))..)))))...... ( -31.30)
>DroYak_CAF1 107997 120 - 1
UCUGCAGUAUCACUUCACCAUGGAGCCCCAGACAACUGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACCCAGUGGAUGGAUCACACCCAGGCUGUGAUUGCCCAUAU
...................((((.((.(((..((...((((((..(((......))).((((....)))).....))))))....))..)))(((((((....).)))))).)))))).. ( -35.30)
>consensus
UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACUGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU
...................((((.((.(((..((...((((((..(((......))).((((....)))).....))))))....))..)))((((((.......)))))).)))))).. (-29.80 = -30.60 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:44 2006