Locus 4218

Sequence ID 3R_DroMel_CAF1
Location 11,361,121 – 11,361,241
Length 120
Max. P 0.500000
window6817

overview

Window 7

Location 11,361,121 – 11,361,241
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.00
Mean single sequence MFE -49.24
Consensus MFE -47.36
Energy contribution -47.44
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -1.07
Structure conservation index 0.96
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11361121 120 + 27905053
UUGUCCACCGCCUCCUGGACAAUCACUUGAGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGACAGAUUGCCCGCCAAGGUGCCAGCC
(((((((........)))))))....(((.((((((((..((((..(((.(.......).)))..))))..))...((((((((...(((.....)))..)))))))).))))))))).. ( -42.90)
>DroSec_CAF1 108661 120 + 1
UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGAACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGGUGGCCAGGUUGCCCGCCAAGGUGCCGGCC
(((((((........))))))).......(((((((.(((..(((.....((((....)))).....)))..))).((((((((.((((((...)))))))))))))).))))))).... ( -51.60)
>DroSim_CAF1 99451 120 + 1
UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGACAGGUUGCCCGCCAAGGUGCCGGCC
(((((((........))))))).......(((((((((..((((..(((.(.......).)))..))))..))...((((((((.(((((.....))))))))))))).))))))).... ( -50.00)
>DroEre_CAF1 96029 120 + 1
UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGCCAGGUUGCCCGCCAAGGUGCCGGCC
(((((((........))))))).......(((((((((..((((..(((.(.......).)))..))))..))...((((((((.(((((.....))))))))))))).))))))).... ( -50.40)
>DroYak_CAF1 98751 120 + 1
UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGUGUGCUUGAUGGUCAGGUUGCCCGCCAAGGUGCCGGCC
(((((((........))))))).......(((((((.((((..((..(((.((.((((((((((.(((....)))...)))))))).)).)).))).))..))))....))))))).... ( -51.30)
>consensus
UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGACAGGUUGCCCGCCAAGGUGCCGGCC
(((((((........))))))).......(((((((.(((..(((.....((((....)))).....)))..))).((((((((.(((((.....))))))))))))).))))))).... (-47.36 = -47.44 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:10 2006