Locus 4210

Sequence ID 3R_DroMel_CAF1
Location 11,355,569 – 11,355,682
Length 113
Max. P 0.701924
window6797

overview

Window 7

Location 11,355,569 – 11,355,682
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.16
Mean single sequence MFE -40.68
Consensus MFE -37.96
Energy contribution -38.40
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.17
Structure conservation index 0.93
SVM decision value 0.35
SVM RNA-class probability 0.701924
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11355569 113 - 27905053
UGGCAGUGUUCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGCCA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG
((((.((((((..........((((......))))(((((..(((((....))..))).-------.)))))..)))))).))))....(((.((((((.....)))).)).)))..... ( -40.50)
>DroSec_CAF1 103146 113 - 1
UGGCAGUGUCCAACUUGUGUCGCUUGUUUUUGAGCGUCUGAAGGCCACGAGUGCAGACA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG
((((.((((((.....(((((((((......))))(((((...((.....)).))))).-------...))))))))))).))))....(((.((((((.....)))).)).)))..... ( -42.30)
>DroSim_CAF1 93904 113 - 1
UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG
((((.((((((.....(((((((((......))))(((((...((.....)).))))).-------...))))))))))).))))....(((.((((((.....)))).)).)))..... ( -42.30)
>DroEre_CAF1 90601 120 - 1
UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACAGCAGACAGCAGACACGGACAUGGCCAUAAAACGGUCCCAGUUUAUCGGGAGGGUGUUCGAG
((((.((((((.....(((((((((......))))(((((...(((....).))......)))))....))))))))))).))))....((..((((........))))..))....... ( -39.90)
>DroYak_CAF1 93161 113 - 1
UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCAGUUUAUCGGGAGGGUGUACGAG
((((.((((((.....(((((((((......))))(((((...((.....)).))))).-------...))))))))))).))))....((..((((........))))..))....... ( -38.40)
>consensus
UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACA_______GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG
((((.((((((.....(((((((((......))))(((((...((.....)).)))))...........))))))))))).))))....(((.((((((.....)))).)).)))..... (-37.96 = -38.40 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:50 2006