| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,352,409 – 11,352,508 |
| Length | 99 |
| Max. P | 0.930309 |
| Location | 11,352,409 – 11,352,508 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.37 |
| Mean single sequence MFE | -26.66 |
| Consensus MFE | -15.31 |
| Energy contribution | -16.43 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.930309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11352409 99 + 27905053 CAUA-GCCAGCGGUAUUGGCGCUCAAAAAAGUUUCAACAUAAUUGAUUUCAUU----UUUAUUCGCGCUUUCUCCGCCGGCCAGCGAAAGCUUUAUAGUCACGU---------------- ....-(((.((((....(((((....((((((.((((.....))))....)))----)))....)))))....)))).))).(((....)))............---------------- ( -28.70) >DroSec_CAF1 94617 115 + 1 UAUUUUCCAGCAGC-UUGAACCGCAGCUAUAGUACG----AAGCGAUUGCAAUGCUAUGUACUCCUGGUGUGUCUGCCGACUGGCGAAACCUNNNNNNNNNNNNNNNNNNNNNNNNNNNN ..(((.(((((.((-..((..((((.(...((((((----.((((.......)))).))))))...).)))))).)).).)))).)))................................ ( -23.00) >DroSim_CAF1 90770 94 + 1 CAUA-GCCAGCGGUAUUGGCGCUCAAAAAAGUUUCAACAUAAUUGAUUUCAUU----UUUAUUCGCGCUUUCUCCGCCGGCCAGCGAAAGCUUUACGGA--------------------- ....-(((.((((....(((((....((((((.((((.....))))....)))----)))....)))))....)))).))).(((....))).......--------------------- ( -28.70) >DroEre_CAF1 87547 99 + 1 CAUA-GACAGCGGUACUGGCGCUCAAAAAAGUUCCAACAUAAUUGAUUUCGUU----UUUAUUCGCGCUUUCUCCGCCGGCCAGCGAAAGCUUUACGGUCACGU---------------- ....-(((.((((....(((((..(((((.....(((.....)))......))----)))....)))))....))))((...(((....)))...)))))....---------------- ( -25.60) >DroYak_CAF1 89950 99 + 1 CAUA-GCCAGCGGUAUUGGCGCUCAAAAAAGUUCCAACGUAAUUGAUUUCAUU----UUUAUUCGCGCUUUCUCCGCCGGCCAGCGAAAGCUUUACGGUCACGA---------------- ....-(((.((((....(((((....((((((.....((....)).....)))----)))....)))))....)))).))).(((....)))...((....)).---------------- ( -27.30) >consensus CAUA_GCCAGCGGUAUUGGCGCUCAAAAAAGUUCCAACAUAAUUGAUUUCAUU____UUUAUUCGCGCUUUCUCCGCCGGCCAGCGAAAGCUUUACGGUCACG_________________ .....(((.((((....(((((..........................................)))))....)))).))).(((....)))............................ (-15.31 = -16.43 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:35 2006