| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,351,078 – 11,351,190 |
| Length | 112 |
| Max. P | 0.660307 |
| Location | 11,351,078 – 11,351,190 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.26 |
| Mean single sequence MFE | -40.69 |
| Consensus MFE | -34.12 |
| Energy contribution | -34.30 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11351078 112 + 27905053 ACCGUU-----CCGUUUUGACCCGGCCAACAAGUUGCCAGGCGG---CGGCCAGCCAAAUUGACAGCAAUUGCAAAGGCGCUUGACAUGCAUCGCAUGUCGCCGGCGCGAGACUUCCCAA ......-----..((((((.((((((....((((.(((..((((---(.....))).(((((....)))))))...)))))))(((((((...)))))))))))).)))))))....... ( -41.70) >DroSec_CAF1 93307 115 + 1 ACCGUU-----CCGUUUUGACCCGGCCAACAAGUUGCCAGGCGGCGGCGGCCAGCCAAAUUGACAGCAAUUGCAAAGGCGCUUGGCAUGCAUCGCAUGUCGCCGGCGCGAGACUUCCCAA ......-----..((((((.((((((...(((((.(((.((((((....))).))).........((....))...))))))))((((((...)))))).))))).)))))))....... ( -44.20) >DroSim_CAF1 89132 112 + 1 ACCGUU-----CCGUUUUGACCCGGCCAACAAGUUGCCAGGCGG---CGGCCAGCCAAAUUGACAGCAAUUGCAAAGGCGCUUGGCAUGCAUCGCAUGUCGCCGGCGCGAGACUUCCCAA ......-----..((((((.((((((...(((((.(((..((((---(.....))).(((((....)))))))...))))))))((((((...)))))).))))).)))))))....... ( -41.30) >DroEre_CAF1 86279 104 + 1 ACCGUU-----UCGUUUUGACCCGGCCAACAAGUUGCCGGGCGG---CG--------AAUUGACAGCAAUUGCAAAGGCGCUUGGCAUGCAUCGCAUGUCGCCGGCGCGAGACUUCCCAA ...(((-----((....((.((((((.((....))))))))))(---(.--------(((((....)))))))....(((((((((((((...))))))))..))))))))))....... ( -39.00) >DroYak_CAF1 88583 109 + 1 ACCGUUCCGUUCCGUUUUGACCCGGCCAACAAGUUGCCAGGCGG---CC--------AAUUGACAGCAAUUGCAAAGGCGCUUGGCAUGCAUCGCAUGUCGUCGGCGCGAGACUUCCCAA ...((..(((.(((...((((...((........(((((((((.---((--------(((((....))))))....).)))))))))......))..)))).))).)))..))....... ( -37.24) >consensus ACCGUU_____CCGUUUUGACCCGGCCAACAAGUUGCCAGGCGG___CGGCCAGCCAAAUUGACAGCAAUUGCAAAGGCGCUUGGCAUGCAUCGCAUGUCGCCGGCGCGAGACUUCCCAA .............((((((.((((((....((((.(((..((......((....)).(((((....)))))))...)))))))(((((((...)))))))))))).)))))))....... (-34.12 = -34.30 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:32 2006