Locus 4202

Sequence ID 3R_DroMel_CAF1
Location 11,350,924 – 11,351,038
Length 114
Max. P 0.574716
window6778

overview

Window 8

Location 11,350,924 – 11,351,038
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -35.02
Consensus MFE -25.70
Energy contribution -26.84
Covariance contribution 1.14
Combinations/Pair 1.03
Mean z-score -1.67
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.574716
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11350924 114 - 27905053
GACAGGUAUUGCAUUUCAGCUGCACUGGGUCUACACGUAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU
..................((.(((((((.....(((.....)))..((((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))------))))).. ( -35.00)
>DroSec_CAF1 93153 114 - 1
GACAGGUAUUGCAUUUCAGCAGCACUGGGACUACACGUAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU
..................((((((((((.....(((.....)))..((((((((((.......))))).)))))))))))))))(((((.(((((((...)))))))------))))).. ( -38.80)
>DroSim_CAF1 88978 114 - 1
GACAGGUAUUGCAUUUCAGCUGCACUGGGACUACACGUAGAGUGAACUAGUUUCGACUCGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU
..................((.(((((((.....(((.....)))..((((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))------))))).. ( -35.00)
>DroEre_CAF1 86125 114 - 1
GACAGGUAUUGCAUUUCAGCUGCACUGGGACCGAACACAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGCCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU
..................((.((((((((......(((...)))...(((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))------))))).. ( -32.90)
>DroYak_CAF1 88438 105 - 1
GACAGGUAUUGCAUUUCAGCUACACUGGGACUACUCAUAGAGUGAACUAGUUUC---------------ACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGGUGGUAUCAACUUU
..................((.(((((((...(((((...)))))..((((....---------------.))))))))))).))(((((.((((((((....))))))))...))))).. ( -33.40)
>consensus
GACAGGUAUUGCAUUUCAGCUGCACUGGGACUACACGUAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG______CAACUUU
..................((.(((((((.....(((.....)))..((((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))......))))).. (-25.70 = -26.84 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:31 2006