Locus 4195

Sequence ID 3R_DroMel_CAF1
Location 11,348,151 – 11,348,252
Length 101
Max. P 0.658565
window6760

overview

Window 0

Location 11,348,151 – 11,348,252
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.67
Mean single sequence MFE -32.28
Consensus MFE -29.02
Energy contribution -29.22
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.26
SVM RNA-class probability 0.658565
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11348151 101 + 27905053
AGCUUCAUUAUCGCA-AGUGCACACCGCAAUACUUCAGUUGGGUGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGCGCCUGAUAU
....(((....(((.-.(..((((((.((((......))))))))))..)...------------------((((((((((.....)))..)))))))...........)))..)))... ( -31.70)
>DroSec_CAF1 86991 102 + 1
UGCUUCAUUAUCGCAAAGUGCACACCGCCACACUUCAGUUGGGUGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGCCCCCGAUAU
........(((((.......(((((((((..((....))..)))).)))))..------------------((((((((((.....)))..)))))))................))))). ( -29.10)
>DroSim_CAF1 85565 101 + 1
CGCUUCAUUAUCGCA-AGUGCACACCGCAACACUUCAGUUGGGUGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGACCCCGAUAU
........(((((..-.(..((((((.((((......))))))))))..)...------------------((((((((((.....)))..)))))))................))))). ( -32.90)
>DroEre_CAF1 83271 101 + 1
CGCUUCAUUAUCGCA-AGUGCACACCGCAACACUUCAGUUGGGCGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCGAGCCCCUGAUAU
.((((.....((((.-...((((.((.((((......)))))).)))))))).------------------((((((((((.....)))..))))))).........))))......... ( -29.90)
>DroYak_CAF1 85502 119 + 1
CGCUUCAUUAUCGCA-AGUGCACACCGCAACACUUCAGCUGGGUGUGUGUGAAGGAUGUGAUGGAUGUGAAGGAUGUGCGGAUAUCCCGGCCAUAUCCAUAUCCUCCGAGCCCCUGAUAU
.((((.....((((.-...(((((((.((.(......).))))))))))))).(((....(((((((((..((((((....))))))....)))))))))....)))))))......... ( -37.80)
>consensus
CGCUUCAUUAUCGCA_AGUGCACACCGCAACACUUCAGUUGGGUGUGUGUGAA__________________GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGCCCCUGAUAU
........(((((....(..((((((.((((......))))))))))..).....................((((((((((.....)))..)))))))................))))). (-29.02 = -29.22 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:14 2006