| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,346,378 – 11,346,482 |
| Length | 104 |
| Max. P | 0.507859 |
| Location | 11,346,378 – 11,346,482 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.05 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.46 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11346378 104 - 27905053 AUUG-----CUCGUUUGAAACGGAGCUGGAAGCUGUAU---UUCUAUAUUU-UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA-------CAGAAAACAGACGACCC ....-----.(((((((...(((...((((((.((((.---...)))).))-))))....)))...((((((....))))))..............-------.......)))))))... ( -23.80) >DroSec_CAF1 85266 107 - 1 AUUG-----CUCGUUUGAAACGGAGCUGGAAGCUGUAUAUUUUCUAUAUUU-UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA-------CAGAAAACAGACGAACC ....-----.(((((((...(((...((((((.((((.......)))).))-))))....)))...((((((....))))))..............-------.......)))))))... ( -23.80) >DroSim_CAF1 83810 107 - 1 AUUG-----CUCGUUUGAAACGGAGCUGGAAGCUGUAUAUUUUCUAUAUUU-UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA-------CAGAAAACAGACGACCC ....-----.(((((((...(((...((((((.((((.......)))).))-))))....)))...((((((....))))))..............-------.......)))))))... ( -23.50) >DroEre_CAF1 81579 92 - 1 AUAG-----CUCUUUUGAAACGGAGCUGGAAGCUGUACAUAUUUUU--------CAUUUGUCGCAUUGACACGUCAGUGUCAUUAAA-ACU--------------GAAAACAGGCGACCC .(((-----((((........)))))))..................--------.....(((((..((((((....)))))).....-.((--------------(....)))))))).. ( -25.90) >DroYak_CAF1 83677 120 - 1 AUUGGUCGUCUCGUUUGGAACGGAGCUGGAAGCUGUACAUAUUUUUUAUUUGUACAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACUGAAAAUAGAAAACAGAAAGCAGACGACCC ...(((((((((((.....)))..(((.....((((...(((((((..(((((((....)).))..((((((....))))))....)))..)))))))....))))..))))))))))). ( -32.50) >consensus AUUG_____CUCGUUUGAAACGGAGCUGGAAGCUGUAUAUAUUCUAUAUUU_UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA_______CAGAAAACAGACGACCC ..........(((((((....(.(((.....))).)..............................((((((....))))))............................)))))))... (-17.42 = -17.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:13 2006