| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,344,111 – 11,344,220 |
| Length | 109 |
| Max. P | 0.571399 |
| Location | 11,344,111 – 11,344,220 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.00 |
| Mean single sequence MFE | -30.88 |
| Consensus MFE | -28.16 |
| Energy contribution | -28.64 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.571399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11344111 109 + 27905053 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCA------AUUCCACCAGUGGCAGUGGCAGGAUGCU-----UGCAUCCUUUAAAAAACAUACAGUAACCAGCGUCGG ((((((.((((((((...(((......))).....)))..)))))------.)))).))..((((..(((.((((((..-----..)))))).......((.....))..)))..)))). ( -32.10) >DroSec_CAF1 82979 109 + 1 GGGGAAAUGCCUCAAAAGGUCAAAUUAGGCAUCCAUUGUUGGGCA------AUUCCACCAGUGGCAGUGGCAGGAUGCU-----UGCAUCCUUUAAAAAACAUACAGUAACCAGCUUAGG ((((.....))))...........((((((..((((((.((((..------..)))).))))))...(((.((((((..-----..)))))).......((.....))..))))))))). ( -29.10) >DroSim_CAF1 81526 109 + 1 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAUCCAUUGUUGGGCA------AUUCCACCAGUGGCAGUGGCAGGAUGCU-----UGCAUCCUUUAAAAAACAUACAGUAACCAGCUUCGG ((((...((((.(.....(((......)))..((((((.((((..------..)))).))))))..).))))(((((..-----..))))).......................)))).. ( -31.50) >DroEre_CAF1 79226 105 + 1 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCG------AUU-CACGA---GCAGUGGCAGGAUGCC-----UGCAUCCUUUAAAAAACAUACAGUAACCGGCGUCGG ((((.....)))).....(((......)))..((((((((.(...------...-..).)---))))))).((((((..-----..))))))..................(((....))) ( -29.60) >DroYak_CAF1 81273 116 + 1 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCUAAAUAAAUU-CACGA---GCAGUGGCAGGAUGCUUGCCUUGCAUCCUUUAAAAAACAUACAGUAACCAGCGGCGG ((((.....)))).....(((......)))..((.((((((((((........(-(((..---...)))).(((((((.......))))))).............)))..))))))).)) ( -32.10) >consensus GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCA______AUUCCACCAGUGGCAGUGGCAGGAUGCU_____UGCAUCCUUUAAAAAACAUACAGUAACCAGCGUCGG ((((.....)))).....(((......)))..((..((((((............((((........)))).(((((((.......)))))))..................))))))..)) (-28.16 = -28.64 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:55 2006