| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,342,136 – 11,342,256 |
| Length | 120 |
| Max. P | 0.979191 |
| Location | 11,342,136 – 11,342,256 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.17 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.60 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11342136 120 + 27905053 UUCCAUUUCGUUUUCCAAAUUAAUUUACUCAACUUUCUUUUCAGCAAUGCAGUACGAACACUAUUUGCAUAUAAUUUUCGUGAAUUUAUUGUUGGCAAAAAUGAUUUGGUUAAUUAUGGG ..((((...(((..((((((((.(((..............(((((((((...((((((.(.(((......))).).))))))....)))))))))..))).))))))))..))).)))). ( -21.89) >DroSec_CAF1 80964 120 + 1 UUCCAUUUCGUUUUCCAAAUUAAUUUACUCAACUUUCUUUUCAGCAAUGCAGUACUAACACUAUUGGCAUAUAAUUUUCGUGAAUUUAUUGUUGGUAAAAAUGAUUUGGUUAAUUAUGGG ..((((...(((..((((((((.(((((.((((.............((((((((.......)))).))))..(((((....)))))....)))))))))..))))))))..))).)))). ( -22.00) >DroSim_CAF1 79530 120 + 1 UUCCAUUUCGUUUUCCAAAUUAAUUUACUCAACUUUCUUUUCAGCAAUGCAGUACGAACACUAUUUGCAUAUAAUUUUCGUGAAUUUAUUGUUGGUAAAAAUGAUUUGGUUAAUUAUGGG ..((((...(((..((((((((.(((((.............((((((((...((((((.(.(((......))).).))))))....)))))))))))))..))))))))..))).)))). ( -23.91) >DroEre_CAF1 76667 120 + 1 UUCCAUUUCGUUUUCCAAAUUAAUUUACUCAGCUUGCUUUUGAGCAAUGCAGUACGAACACAAUUUGCAUAUAAUUUUUGUGAAUUUAUUGUUGGUAAAAAUGAUUUGGUUAAUUUUGGA .((((....(((..((((((((.(((.....(((((((....))))).))..(((.((((.((((..((.........))..))))...)))).)))))).))))))))..)))..)))) ( -29.10) >DroYak_CAF1 78571 120 + 1 UUCCAUUUCGUUUUCCAAAUUAAUUUACUCAACUUGCUUUUGAGCAAUGCAGUACGAACGGUAUUUGCAUAUAAUUUUUGUGAAUUUAUUGUUGGUAAAAAUGAUUUGGUUAAUUUUGGA .((((....(((..((((((((.(((((.((((.((((....))))(((((((((.....))).))))))....................)))))))))..))))))))..)))..)))) ( -29.00) >consensus UUCCAUUUCGUUUUCCAAAUUAAUUUACUCAACUUUCUUUUCAGCAAUGCAGUACGAACACUAUUUGCAUAUAAUUUUCGUGAAUUUAUUGUUGGUAAAAAUGAUUUGGUUAAUUAUGGG .(((((...(((..((((((((.(((((.((((.............((((((............))))))..(((((....)))))....)))))))))..))))))))..))).))))) (-21.20 = -21.60 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:49 2006