| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,339,227 – 11,339,341 |
| Length | 114 |
| Max. P | 0.830309 |
| Location | 11,339,227 – 11,339,341 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11339227 114 + 27905053 AUGGCCCAAGGAAACACAUCAUCAAAAGAAGCUGGACCAGACUGGUCUAGGCCAUCU------UCCAGAUGAUACACUCAUAAAAACUUCACAUUUUUAGUUAUGCUAUAAUUGAAAUAC (((((....(....)..((((((..((((.((((((((.....)))))).))..)))------)...))))))...............................)))))........... ( -23.70) >DroSec_CAF1 78005 114 + 1 AUGGCCCAAGGAAACACAUUAUCAAAAGAAGCUGGACCAGACUGGUCUAGACCAUCU------UUCAGAUGAUACACUCAUAAAAAUUUCACAUUUUUAGUUAUGCUAUGAUUGAAAUAC ((((.....(....)..((((((.(((((..(((((((.....)))))))....)))------))..))))))....))))....((((((.(((..(((.....))).))))))))).. ( -24.30) >DroSim_CAF1 76606 114 + 1 AUGGCCCAAGGAAACACAUCAUCAAAAGAAGCUGGACCAGACUGGUCUAGACCAUCU------UUCAGAUGAUACACUCAUAAAAAUUGCACAUUUUUAGUUAGGCUAUGAUUGAAAUAC ((((((...(....)..((((((.(((((..(((((((.....)))))))....)))------))..)))))).......(((((((.....)))))))....))))))........... ( -29.60) >DroEre_CAF1 73801 107 + 1 AUGGCCCAAGGAAACACAUCAUCAAAAGAAGCUGGACCAGACUGGUCUGGACCAUCUAGACCAACUAGAUGAUACACAGGCAAAAAUUUCAC--UGUUAC-----------UUGGAAUAC .....(((((.......((((((......(((((...))).))(((((((.....))))))).....))))))..((((............)--)))..)-----------))))..... ( -27.90) >DroYak_CAF1 75603 114 + 1 GUGGCCCAAGGAAACAGAUCAUCAAAAGAAGCUGCACCAUACUGGUCUAGACCAUCUAGGCUAUCUAGAAGAUACACAGGCAAAAAUUGCAC--UGUUAGUUAUA----AGUUGGAAUGC (..((....(....)......((....)).))..).(((.((((((((((.....))))))).............(((((((.....))).)--)))........----))))))..... ( -25.30) >consensus AUGGCCCAAGGAAACACAUCAUCAAAAGAAGCUGGACCAGACUGGUCUAGACCAUCU______UCCAGAUGAUACACUCAUAAAAAUUUCACAUUUUUAGUUAUGCUAUAAUUGAAAUAC .........(....)......((((......(((((((.....)))))))..(((((.........)))))........................................))))..... (-15.00 = -15.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:37 2006