Locus 4181

Sequence ID 3R_DroMel_CAF1
Location 11,338,921 – 11,339,039
Length 118
Max. P 0.825215
window6719

overview

Window 9

Location 11,338,921 – 11,339,039
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.13
Mean single sequence MFE -34.17
Consensus MFE -27.42
Energy contribution -28.30
Covariance contribution 0.88
Combinations/Pair 1.16
Mean z-score -1.84
Structure conservation index 0.80
SVM decision value 0.69
SVM RNA-class probability 0.825215
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11338921 118 - 27905053
UCCUUUUUACGCAU--CCAUUGUGGCCGGAACAAUCCCGGAAUUUAUUGACGGGAAAUGCAGACUUGGCAGAGCCUUCGCUGCUACUGCUUAUAAACAGAAGUAAAAAGUCUGUUGCCAU
..............--.....(((((........(((((..(.....)..)))))...(((((((((((((........)))))..(((((........)))))..)))))))).))))) ( -32.20)
>DroSec_CAF1 77699 118 - 1
UCCUUUUUACGCAU--CCAUUGUGGCCGGAACUUUCCCGGAAUUUAUUGACGGGGAAUGCAGACUUGGCGAAGCCUUCGCUGCUACUACUUAUAAACAGAAGUAGAAAGUCUGUUGCUAU
((((..(((((((.--....)))).((((.......)))).......)))..))))..(((((((((((((.....)))))....((((((........)))))).))))))))...... ( -35.10)
>DroSim_CAF1 76300 118 - 1
UCCUUUUUACGCAU--CCAUUGUGGCCGGAACUUUCCCGGAAUUUAUUGACGGGGAAUGCAGACUUGGCGAAGCCUUCGCUGCUACUACUUAUAAACAGAAGUAGAAAGUCUGUUGCUAU
((((..(((((((.--....)))).((((.......)))).......)))..))))..(((((((((((((.....)))))....((((((........)))))).))))))))...... ( -35.10)
>DroYak_CAF1 75298 105 - 1
UCCUUUUUACGCAUUUCCAUUGCGGCAGCCACUUUCCCGGCAUUUAUUGACGGGGAAUGCAGACUUGGC---------------ACUGCUUACAAACCGAAGUAGGAAGUCUGUUGCCAU
..........(((.......)))((((.....(((((((.((.....)).))))))).((((((((...---------------.((((((........)))))).)))))))))))).. ( -34.30)
>consensus
UCCUUUUUACGCAU__CCAUUGUGGCCGGAACUUUCCCGGAAUUUAUUGACGGGGAAUGCAGACUUGGCGAAGCCUUCGCUGCUACUACUUAUAAACAGAAGUAGAAAGUCUGUUGCCAU
..........(((.......)))(((......(((((((...........))))))).(((((((((((((.....)))))....((((((........)))))).)))))))).))).. (-27.42 = -28.30 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:36 2006