| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,546,335 – 1,546,435 |
| Length | 100 |
| Max. P | 0.877666 |
| Location | 1,546,335 – 1,546,435 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.62 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -16.54 |
| Energy contribution | -17.10 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1546335 100 + 27905053 GAAGGACAAGAAUUAGAUGUGAAAUCUU-UUCUCAAGUUUUUUUAU-----------UAAGAUCCUU-----AAAAGGAUUCCCG---AAUAACCGUUAUAAAUUAGCGGUGCUAGGGAA (((((((.((((..((((.....)))).-))))...)))))))...-----------....(((((.-----...)))))((((.---....(((((((.....)))))))....)))). ( -26.60) >DroSec_CAF1 47931 100 + 1 GAAGGACAAGAAUUAGAUGUGAAAUCUU-UUCUCAAGUUUUUUUUU-----------UAAGAUCCUU-----GAAAGGAUUCCCA---AAUAACCGUUAUAAAUUAGCGGUGCUAGGGGA (((((((.((((..((((.....)))).-))))...)))))))...-----------...((((((.-----...))))))(((.---....(((((((.....))))))).....))). ( -26.50) >DroSim_CAF1 48575 100 + 1 GAAGGACAAGAAUUAGAUGUGAAAUCUU-UUCUCAAGUUUUUUUUG-----------UAAGAUCCUU-----GAAAGGAUUCCCA---AAUAACCGUUAUAAAUUAGCGGUGCUAGGGGA (((((((.((((..((((.....)))).-))))...)))))))...-----------...((((((.-----...))))))(((.---....(((((((.....))))))).....))). ( -26.50) >DroEre_CAF1 47322 95 + 1 GAAGGACAA-GAUGAGAUGAGAAAUAUU-UUCUCAAGUUUCUU---------------AGGAUCCUU-----GAAAGGAUUCCCG---AAUAACCGUUAUAAAUUAGCGGUGGUGGGGAA .((((((..-..(((((((((((.....-))))))....))))---------------).).)))))-----.......((((((---....(((((((.....)))))))..)))))). ( -29.70) >DroYak_CAF1 43663 111 + 1 GAAGGACAACGAUGAGAUGAGAAACCUU-UUCUCAAGUUUUUUUUUCCUUGUAGAUUGAAGAUCCUU-----GAAAGGAUUCCAA---AAUAACCGUUAUAAAUUAGCGGUGGUAGGAAA .(((((.(((..(((((.(((....)))-.))))).))).)))))((((......(((..((((((.-----...)))))).)))---....(((((((.....)))))))...)))).. ( -26.70) >DroAna_CAF1 45829 109 + 1 GAAGGACAAGGAUUAGAUGGGAAAUCUUUUUCUUAAGUUUUUUUAU-----------UUGGGACUCUGAAAGGAAAGGAUUCUCAUGGAAUAACCGUUAUAAAUUAACGGUAUUAGAGCA ...........(((..(((((((.((((((((((.((((((.....-----------..))))))....)))))))))))))))))..))).(((((((.....)))))))......... ( -26.70) >consensus GAAGGACAAGAAUUAGAUGUGAAAUCUU_UUCUCAAGUUUUUUUUU___________UAAGAUCCUU_____GAAAGGAUUCCCA___AAUAACCGUUAUAAAUUAGCGGUGCUAGGGAA (((((((.((((..((((.....))))..))))...))))))).................(((((((.......)))))))(((........(((((((.....)))))))....))).. (-16.54 = -17.10 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:44 2006