Locus 4178

Sequence ID 3R_DroMel_CAF1
Location 11,334,639 – 11,334,737
Length 98
Max. P 0.594029
window6710

overview

Window 0

Location 11,334,639 – 11,334,737
Length 98
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 85.67
Mean single sequence MFE -23.70
Consensus MFE -16.63
Energy contribution -17.97
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.594029
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11334639 98 - 27905053
AU----------------GUAGAUAAGCUAUAAGCCUUAUCGAUGACAUAACAGUGAUUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGCGGCAUAUGUAUUCAUUAAUAAAU
((----------------((.(((((((.....).))))))....))))...(((((..(((((((((((((....))))))......)))))....))...)))))....... ( -19.00)
>DroSec_CAF1 73871 113 - 1
AUAAGUGCACGUGAAACUGUAGAUAAGCUGUAAGCUUUAUCGGUGAUAUUACAGUGAGUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGC-GCAUAUGUAUUCAUUAAUAAAU
(((.((((..((((.(((((((....((((..........))))....)))))))...)))).(((((((((....))))))......)))-)))).))).............. ( -24.60)
>DroSim_CAF1 72115 114 - 1
AUAAGUGCACGUGAAACAGUAGAUAAGCUGUAAGUCUUAUCGGUGAUAUUACAGUGAGUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGCGGCAUAUGUAUUCAUUAAUAAAU
...((((((..((........(((..((((((((((........))).)))))))..))).(((((((((((....))))))......)))))))..))))))........... ( -27.50)
>consensus
AUAAGUGCACGUGAAAC_GUAGAUAAGCUGUAAGCCUUAUCGGUGAUAUUACAGUGAGUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGCGGCAUAUGUAUUCAUUAAUAAAU
..................(((.(((.((((((((......(((((((..........)))))))..((((((....))))))....)))))))).))).)))............ (-16.63 = -17.97 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:28 2006