| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,333,857 – 11,333,977 |
| Length | 120 |
| Max. P | 0.595548 |
| Location | 11,333,857 – 11,333,977 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.75 |
| Mean single sequence MFE | -47.48 |
| Consensus MFE | -31.26 |
| Energy contribution | -31.70 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11333857 120 - 27905053 UCAAGCUCUUCACUCGGAAACGUGAGCUCAGCCAGGAGAUGAUCAACUUGGCGAAGAGCUAUGCUGAACAGUACGGCAUGGGCAACCAGAUCGCGUGGGAGAUGCAAUCGCCGGGCGAAU ...((((((((.(.((....)).)......((((((..........))))))))))))))((((((.......))))))((....))...((((.(((((.......)).))).)))).. ( -47.00) >DroSec_CAF1 73090 120 - 1 UCAAGCUCUUCACCCGGCAACGUGAGGUCAGCCAGGAUACGAUCGACACGGCGAAGAGCCUUGCUGAGUCGUACGGCAUGGGCAACCAGAUCGCGUGGGAGAUGCAAUCGCCGGACGAAU .((((((((((.((.(....)(((.((((...........))))..))))).)))))).)))).....((((.((((.(((....)))(((.((((.....)))).))))))).)))).. ( -45.70) >DroSim_CAF1 71334 120 - 1 UCAAGCUCUUCACCCGGCAACGUGAGGUCAGCCAGGAUACGAUCGACAAGGCGGAGAGCCUUGCUGAGACGUACGGCAUGGGCAACCAGAUCGCGUGGGAGAUGCAAUCGCCGGGCGAAU ........(((.((((((.......((((.(((....((((.(((.((((((.....)))))).)))..)))).))).(((....)))))))((((.....))))....)))))).))). ( -49.90) >DroEre_CAF1 68591 120 - 1 UCAAGCUCUUCACCCGGAAUCGGGAGGUCGACCAGGCGGUGAUCGACAAGGCGGAGAAGUUCGCUGAGGAGAACGGCAUGGGCGGCCAGAUCGCGUGGGAGAAGCAAUCGCCGGGUGAAU ........(((((((((........(((((.(((.((.((..((..(..((((((....))))))..)..)))).)).))).))))).(((.((.........)).))).))))))))). ( -47.40) >DroYak_CAF1 70405 120 - 1 UCAAGCUCUUCACCCGGGAACGGGAGGUCAGCCAGGAGAUGAUCGCCAUGGCGGAGGCAUAUGCCGAGAGGUACGGCAUUGGCAACCAGAUCGCGUGGGAGAAGCAAUCGCCGGGUGAAU (((...(((((.((((....)))).((....)).))))))))(((((.((((((..((..((((((.......))))))..))..)).(((.((.........)).)))))))))))).. ( -47.40) >consensus UCAAGCUCUUCACCCGGAAACGUGAGGUCAGCCAGGAGAUGAUCGACAAGGCGGAGAGCUUUGCUGAGAAGUACGGCAUGGGCAACCAGAUCGCGUGGGAGAUGCAAUCGCCGGGCGAAU ....(((((((.((((....))...((((...........)))).....)).)))))))...((((.......)))).(((....)))..((((.(((((.......)).))).)))).. (-31.26 = -31.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:25 2006