Locus 4174

Sequence ID 3R_DroMel_CAF1
Location 11,332,418 – 11,332,529
Length 111
Max. P 0.546364
window6700

overview

Window 0

Location 11,332,418 – 11,332,529
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.92
Mean single sequence MFE -30.09
Consensus MFE -22.66
Energy contribution -22.66
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.75
SVM decision value 0.03
SVM RNA-class probability 0.546364
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11332418 111 - 27905053
GAAAGG------GAACAGAAGUCGGGGAAAGCUGGCUAAAAAUGAAAGUUAAUGUGGUGG---AUCGGUGGAAGGGUUAAACGAAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU
.....(------(((((..((((((......))))))..............((((((.((---.(((.(.....((((......))))....).))).))))).)))...)))))).... ( -27.70)
>DroSec_CAF1 71623 114 - 1
GAAAGG------GAACAGAAGUCGGGGAUAGCUGGCCAAAAACGAAAGUUAAUGUGGUGGAUGAUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU
.....(------((((((..((.((((...(((.((((..(((....)))....))))((....((.((...........)).)).))....)))...)))).))...).)))))).... ( -31.80)
>DroSim_CAF1 69838 111 - 1
GAAAGG------GAACAGAAGUCGGGGAAAGCUGGCUAAAAACGAAAGUUAAUGUGGUGG---AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU
.....(------(((((..((((((......))))))...(((....))).((((((.((---.(((.(.....((((......))))....).))).))))).)))...)))))).... ( -30.60)
>DroEre_CAF1 67110 111 - 1
GGAAGG------CAGCAGAACUCGGGGAAAGCUGGCUAAAAACGAAAGUUAAUGUGGCAC---AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAGCCCCAGCGUACGUGUUCCAAUU
((((.(------(.((.(....)((((...(((.((((..(((....)))....))))..---.....((....((((......))))..)))))...)))).))....)).)))).... ( -31.00)
>DroYak_CAF1 68874 117 - 1
GAAAGGAUGGAGAAGAAGAAGUCGGGGGCAGCUGGCUAAAAACGAAAGUUAAUGUGGCAG---AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU
.......(((((........((.((((...(((.((((..(((....)))....))))..---.....((....((((......))))..)))))...)))).)).......)))))... ( -29.36)
>consensus
GAAAGG______GAACAGAAGUCGGGGAAAGCUGGCUAAAAACGAAAGUUAAUGUGGUGG___AUCGGUGGAAGGGUUAAACGGAGCCAACAAGUGAACCCCAGCGUACGUGUUCCAAUU
............((((((..((.((((...(((.((((..(((....)))....))))..........((....((((......))))..)))))...)))).))...).)))))..... (-22.66 = -22.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:18 2006