Locus 4169

Sequence ID 3R_DroMel_CAF1
Location 11,329,969 – 11,330,084
Length 115
Max. P 0.986514
window6687

overview

Window 7

Location 11,329,969 – 11,330,084
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -23.91
Consensus MFE -22.02
Energy contribution -22.38
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.70
Structure conservation index 0.92
SVM decision value 2.04
SVM RNA-class probability 0.986514
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11329969 115 - 27905053
AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGACUCUGGCAAAUGGCAAAUAAAUACAGGAACGCCAAACUGAAA-----
.((((......(((((((((.(((((((((.....)))).))))))).))))))).............(((....))))))).((((................))))........----- ( -19.29)
>DroSec_CAF1 69117 115 - 1
AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCAAAUAAAUACAGGAACGGCAAACUGAAA-----
.((((.((.(((....(((((((....)).........(((((((((.((((((...............)))))).))))))))))))))......)))))...)))).......----- ( -26.16)
>DroSim_CAF1 67333 115 - 1
AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCGAAUAAAUACAGGAACGGCAAACUGAAA-----
.((((.((.(((..((((..(((...((((.....))))((((((((.((((((...............)))))).)))))))).)))...)))).)))))...)))).......----- ( -25.86)
>DroEre_CAF1 64671 119 - 1
AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUC-CUGGCAAAUGGCGAAUAAAUACAGAAACGGCAAGCUGAAACAGAA
.((((....(((..((((..(((...((((.....))))((((((((..(((((...............)))))-.)))))))).)))...)))).))).....))))............ ( -22.16)
>DroYak_CAF1 66434 115 - 1
AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCGAAUAAAUACAGAAACUGCAAACUGAAA-----
.(((((...(((..((((..(((...((((.....))))((((((((.((((((...............)))))).)))))))).)))...)))).)))....))))).......----- ( -26.06)
>consensus
AUUGCAUCGCUGAAGUUUUGCGCAAAAGUUAAUAAAAUUAUUUGCCACAGACUUUGAUAAAUAUGAAACAGGUCUCUGGCAAAUGGCGAAUAAAUACAGGAACGGCAAACUGAAA_____
.((((....(((....(((((((....)).........(((((((((.((((((...............)))))).))))))))))))))......))).....))))............ (-22.02 = -22.38 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:06 2006